Factsheet for Os12t0546800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

plasma membrane: 28056797

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36242	Sorghum	extracellular	67.93	72.43
Zm00001d006399_P001	Maize	extracellular	61.72	69.11
KRH67777	Soybean	cytosol	28.62	52.2
Bra023523.1-P	Field mustard	cytosol	36.55	45.3
CDX85546	Canola	extracellular	37.24	42.69
CDY44393	Canola	extracellular	36.21	42.68
Bra033099.1-P	Field mustard	extracellular	35.86	42.28
VIT_14s0068g00600.t01	Wine grape	extracellular	36.55	42.23
CDY04077	Canola	extracellular	35.52	41.87
Solyc03g115300.1.1	Tomato	extracellular	37.24	41.7
CDX90986	Canola	extracellular	36.21	41.5
Solyc03g115350.1.1	Tomato	extracellular	36.9	41.47
VIT_07s0005g04850.t01	Wine grape	extracellular	34.14	41.25
Bra025397.1-P	Field mustard	extracellular	34.83	40.56
CDX86367	Canola	extracellular	34.83	40.56
Solyc03g115310.1.1	Tomato	extracellular	36.21	40.54
Solyc03g115320.1.1	Tomato	extracellular	36.21	40.38
Os01t0249100-00	Rice	extracellular	30.34	40.37
Os05t0277000-00	Rice	extracellular	34.48	40.32
Os01t0248900-01	Rice	extracellular	34.83	40.24
CDX85270	Canola	extracellular	34.14	39.76
Os05t0276500-01	Rice	extracellular	34.48	39.22
Solyc03g115270.1.1	Tomato	extracellular	34.83	39.0
Solyc03g115340.1.1	Tomato	mitochondrion	23.79	38.98
CDY15952	Canola	extracellular	33.79	38.43
Bra030353.1-P	Field mustard	extracellular	33.79	38.43
Os10t0439100-00	Rice	extracellular	33.79	38.43
GSMUA_Achr4P27910_001	Banana	extracellular	32.41	38.21
GSMUA_Achr4P28010_001	Banana	extracellular	32.41	38.21
GSMUA_Achr4P27950_001	Banana	extracellular	32.07	37.8
CDX99666	Canola	extracellular	34.83	37.55
CDY37873	Canola	extracellular	34.83	37.13
Os03t0428700-01	Rice	extracellular	32.76	37.11
TraesCS7B01G218200.1	Wheat	cytosol, extracellular, plastid	31.72	37.1
AT5G39280.1	Thale cress	extracellular	35.17	37.09
AT5G39300.1	Thale cress	extracellular	35.17	36.96
Os03t0155900-01	Rice	extracellular	31.72	36.95
Os10t0535900-00	Rice	extracellular	33.79	36.84
CDX74479	Canola	extracellular	34.48	36.76
TraesCS7D01G314100.1	Wheat	extracellular	32.41	36.43
Bra028232.1-P	Field mustard	extracellular	34.14	36.4
AT5G39260.1	Thale cress	extracellular	32.76	36.26
Os06t0718100-01	Rice	plastid	32.76	36.12
AT5G39290.1	Thale cress	extracellular	34.48	35.84
AT5G39270.1	Thale cress	extracellular	34.14	35.48
Os03t0156300-00	Rice	extracellular	28.97	35.0
Os03t0156000-00	Rice	extracellular	30.0	34.94
AT5G39310.1	Thale cress	extracellular	35.86	33.33
HORVU1Hr1G051620.1	Barley	extracellular, mitochondrion	16.21	32.19
Os06t0108600-00	Rice	extracellular	29.66	32.09
HORVU1Hr1G051640.1	Barley	extracellular, mitochondrion	15.52	30.2
PGSC0003DMT400063359	Potato	cytosol, plastid, vacuole	32.41	22.93
PGSC0003DMT400063363	Potato	extracellular	35.17	20.9

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.1	EntrezGene:4352454	ProteinID:AAL24497.1	ProteinID:ABA98863.1
EMBL:AK071328	EMBL:AY100692	ProteinID:BAF29984.1	ProteinID:BAT17537.1	InterPro:Expan_Lol_pI	InterPro:Expansin
InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618
GO:GO:0005623	GO:GO:0008150	GO:GO:0009664	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0030312	GO:GO:0071555	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908
EnsemblPlantsGene:Os12g0546800	EnsemblPlants:Os12t0546800-01	PFAM:PF01357	PFAM:PF03330	PRINTS:PR01225	PRINTS:PR01226
PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31867	PANTHER:PTHR31867:SF12	UniProt:Q2QP13	InterPro:RlpA-like_DPBB
InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI0000680E9E	RefSeq:XP_015619553.1	SEG:seg	:	:	:

Description

ALPHA-EXPANSIN 26Alpha expansin 26. (Os12t0546800-01)

Coordinates

chr12:+:22089434..22091864

Molecular Weight (calculated)

30048.5 Da

IEP (calculated)

8.442

GRAVY (calculated)

-0.271

Length

290 amino acids

Sequence
(BLAST)

001: MDTTTTMAPL PLLTTTSLLL FFFLASSFAA DVVVAGGGGG GGGYDGGGDG EGGGGGDGEG GGGGGGAKMP HVNHGRYKCG PWVDGHATFY GGRDASGTTE
101: GGACGYKDAD GYGAMTAAVS PALFDNGAGC GACYELKGDS GKTVVVTATN QAPPPVNGMK GEHFDLTMPA FLSIAEEKLG VVPVSYRKVA CVRQGGIKYT
201: ITGNPSYNMV MVKNVGGAGD VVKLTVKGTK RVKWTPLQRS WGQLWKTEAN LTGESLTFRV MTGDHRKATS WRVAPRDWTY DNTYQAKKNF

Best Arabidopsis Sequence Match ( AT2G37640.1 )
(BLAST)

001: MTATAFRVGL WLAVTASFLL TATNAKIPGV YSGGPWQNAH ATFYGGSDAS GTMGGACGYG NLYSQGYGVN TAALSTALFN NGFSCGACFE IKCTDDPRWC
101: VPGNPSILVT ATNFCPPNFA QPSDDGGWCN PPREHFDLAM PMFLKIGLYR AGIVPVSYRR VPCRKIGGIR FTVNGFRYFN LVLVTNVAGA GDINGVSVKG
201: SKTDWVRMSR NWGQNWQSNA VLIGQSLSFR VTASDRRSST SWNVAPATWQ FGQTFSGKNF RV

Arabidopsis Description

EXPA3EXP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VPK3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.