CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
plastid 1
extracellular 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030353.1-P	Field mustard	extracellular	100.0	100.0
CDX99666	Canola	extracellular	98.04	92.94
CDY37873	Canola	extracellular	67.45	63.24
CDX74479	Canola	extracellular	67.06	62.87
AT5G39310.1	Thale cress	extracellular	74.9	61.22
VIT_07s0005g04850.t01	Wine grape	extracellular	56.08	59.58
CDX86367	Canola	extracellular	57.25	58.63
CDY44393	Canola	extracellular	56.47	58.54
CDY04077	Canola	extracellular	56.47	58.54
CDX85270	Canola	extracellular	56.08	57.43
KRH01265	Soybean	extracellular	49.8	55.7
Solyc03g115310.1.1	Tomato	extracellular	56.08	55.21
CDX85546	Canola	extracellular	54.51	54.94
Solyc03g115270.1.1	Tomato	extracellular	55.69	54.83
KRH44992	Soybean	extracellular	55.69	54.83
Solyc03g115350.1.1	Tomato	extracellular	54.9	54.26
Solyc03g115320.1.1	Tomato	extracellular	55.29	54.23
CDX90986	Canola	extracellular	53.33	53.75
Solyc03g115300.1.1	Tomato	extracellular	54.12	53.28
CDY44069	Canola	extracellular	31.76	51.92
Solyc03g115340.1.1	Tomato	mitochondrion	35.69	51.41
CDY66063	Canola	cytosol, extracellular, plastid	31.76	49.09
CDY71009	Canola	extracellular	38.04	48.26
CDY71742	Canola	extracellular	38.04	48.26
TraesCS7B01G218200.1	Wheat	cytosol, extracellular, plastid	45.49	46.77
GSMUA_Achr4P27950_001	Banana	extracellular	44.31	45.94
GSMUA_Achr4P28010_001	Banana	extracellular	44.31	45.94
HORVU7Hr1G075680.1	Barley	extracellular	45.88	45.35
TraesCS7D01G314100.1	Wheat	extracellular	45.88	45.35
GSMUA_Achr4P27910_001	Banana	extracellular	43.53	45.12
EES14420	Sorghum	extracellular	45.49	43.61
CDY69805	Canola	extracellular	25.88	42.86
CDX75827	Canola	extracellular	37.25	42.79
Zm00001d035083_P001	Maize	extracellular	45.1	41.52
CDX98555	Canola	extracellular	40.78	41.43
CDX97663	Canola	extracellular	40.78	41.43
CDY64890	Canola	extracellular	41.57	41.25
CDX98053	Canola	extracellular	42.35	41.06
CDY58613	Canola	extracellular	42.35	41.06
CDY16014	Canola	extracellular	42.35	41.06
CDY21056	Canola	extracellular	42.35	41.06
CDY57071	Canola	extracellular	41.96	40.68
CDX82436	Canola	extracellular	39.22	39.84
CDY44426	Canola	extracellular	16.47	34.71
Os12t0546800-01	Rice	plasma membrane	38.43	33.79
PGSC0003DMT400063359	Potato	cytosol, plastid, vacuole	51.37	31.95
PGSC0003DMT400063363	Potato	extracellular	55.69	29.1

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.1	GO:A0A078FSX0	UniProt:A0A078FSX0	EnsemblPlants:CDY15952
ProteinID:CDY15952	ProteinID:CDY15952.1	InterPro:Expan_Lol_pI	InterPro:Expansin	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD
InterPro:Expansin_CBD_sf	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0008150
GO:GO:0009664	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030312	EnsemblPlantsGene:GSBRNA2T00090329001
InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908	PFAM:PF01357	PFAM:PF03330
PRINTS:PR01225	PRINTS:PR01226	PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31867	PANTHER:PTHR31867:SF70
InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685	UniParc:UPI0002543A4F
SEG:seg	:	:	:	:	:

Description

BnaA04g11590DBnaA04g11590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FSX0]

Coordinates

chrLK032059:+:689317..690538

Molecular Weight (calculated)

27870.3 Da

IEP (calculated)

8.833

GRAVY (calculated)

-0.305

Length

255 amino acids

Sequence
(BLAST)

001: MAMVIWIVPM TYGHGHGHGH GHGHGHHAPV AGWLDARATF YGDINGGQTH QGACGYGDLH KQGFGLATAA LSTALFNNGY TCGACYEIKC ANSPQWCLPG
101: SIKITATNFC PPDPSNKKDS WCNPPQKHFD LSQPMFLKIA QYKAGVVPVR YRRVHCTKTG GVKFEIKGNP HFVMVLPYNV GGAGDIKELC IKGTKTDWIK
201: MQKNWGQIWN SGVVMTGQCL SFRITTSDGS TKDFMDVTPT NWGFNGQAFD GKINF

Best Arabidopsis Sequence Match ( AT5G39310.1 )
(BLAST)

001: MELLKRKLYA KILMMVMVIW IAPMTNGHDH ASHVPGGRPG AHPSHGAHPA HGAHPSHGAH PSHGAHPSHG AHPSHGALPS HGGQVPHSGW GHGRATFYGD
101: INGGETQQGA CGYGDLHKQG YGLETAALST ALFNNGSRCG ACYEIMCEHA PQWCLPGSIK ITATNFCPPD FTKPNDNWCN PPQKHFDLSQ PMFLKIAKYK
201: AGVVPVKFRR VPCAKIGGVK FEIKGNPHFL MILPYNVGGA GAVRAMQIKG TRTQWIAMKK NWGQIWSTGV VLTGQCLSFR LTTSDGVMKE FIDVTPPDWK
301: CNGQSFDGKV NF

Arabidopsis Description

EXPA24Expansin-A24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL76]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.