Factsheet for VIT_07s0005g04850.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	extracellular
Plant-mPloc:	extracellular
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0068g00600.t01	Wine grape	extracellular	64.58	61.75
Solyc03g115310.1.1	Tomato	extracellular	66.25	61.39
Solyc03g115270.1.1	Tomato	extracellular	65.83	61.0
CDY44393	Canola	extracellular	61.25	59.76
CDY04077	Canola	extracellular	61.25	59.76
Bra033099.1-P	Field mustard	extracellular	61.25	59.76
Bra025397.1-P	Field mustard	extracellular	61.67	59.44
CDX85270	Canola	extracellular	61.67	59.44
CDX86367	Canola	extracellular	61.25	59.04
Solyc03g115300.1.1	Tomato	extracellular	63.33	58.69
Solyc03g115350.1.1	Tomato	extracellular	62.92	58.53
Solyc03g115320.1.1	Tomato	extracellular	63.33	58.46
Solyc03g115340.1.1	Tomato	mitochondrion	42.08	57.06
Bra030353.1-P	Field mustard	extracellular	59.58	56.08
CDY15952	Canola	extracellular	59.58	56.08
CDX99666	Canola	extracellular	59.58	53.16
AT5G39300.1	Thale cress	extracellular	59.58	51.81
AT5G39280.1	Thale cress	extracellular	58.75	51.27
GSMUA_Achr4P27910_001	Banana	extracellular	51.25	50.0
GSMUA_Achr4P27950_001	Banana	extracellular	51.25	50.0
AT5G39270.1	Thale cress	extracellular	57.92	49.82
CDY37873	Canola	extracellular	56.25	49.63
CDX74479	Canola	extracellular	56.25	49.63
Bra028232.1-P	Field mustard	extracellular	55.83	49.26
TraesCS7B01G218200.1	Wheat	cytosol, extracellular, plastid	50.83	49.19
GSMUA_Achr4P28010_001	Banana	extracellular	50.42	49.19
AT5G39290.1	Thale cress	extracellular	57.08	49.1
TraesCS7D01G314100.1	Wheat	extracellular	52.08	48.45
HORVU7Hr1G075680.1	Barley	extracellular	51.25	47.67
AT5G39310.1	Thale cress	extracellular	61.25	47.12
AT5G39260.1	Thale cress	extracellular	50.42	46.18
EES14420	Sorghum	extracellular	50.83	45.86
Zm00001d035083_P001	Maize	extracellular	51.25	44.4
VIT_02s0025g04700.t01	Wine grape	extracellular	47.08	42.8
VIT_19s0014g02910.t01	Wine grape	extracellular	42.92	40.08
PGSC0003DMT400063359	Potato	cytosol, plastid, vacuole	60.42	35.37
Os12t0546800-01	Rice	plasma membrane	41.25	34.14
PGSC0003DMT400063363	Potato	extracellular	64.58	31.76

Protein Annotations

EntrezGene:100246415	wikigene:100246415	Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.1	ProteinID:CBI37228
ProteinID:CBI37228.3	UniProt:D7U3B1	InterPro:Expan_Lol_pI	InterPro:Expansin	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD
InterPro:Expansin_CBD_sf	EMBL:FN596502	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623
GO:GO:0008150	GO:GO:0009664	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030312
InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908	EntrezGene:LOC100246415	wikigene:LOC100246415
PFAM:PF01357	PFAM:PF03330	PRINTS:PR01225	PRINTS:PR01226	PFscan:PS50842	PFscan:PS50843
PANTHER:PTHR31867	PANTHER:PTHR31867:SF70	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590
SUPFAM:SSF50685	UniParc:UPI0001BE49F4	ArrayExpress:VIT_07s0005g04850	EnsemblPlantsGene:VIT_07s0005g04850	EnsemblPlants:VIT_07s0005g04850.t01	unigene:Vvi.22750
RefSeq:XP_002267104	RefSeq:XP_002267104.1	:	:	:	:

Description

No Description!

Coordinates

chr7:-:8110141..8111055

Molecular Weight (calculated)

26431.5 Da

IEP (calculated)

8.192

GRAVY (calculated)

-0.161

Length

240 amino acids

Sequence
(BLAST)

001: MAMALVVGAL GQIGGHLDAW GDGRATFYGD IHGSETMYGA CGYGNLFEQG YGLETTALST ALFNNGATCG ACFELYCVHS KWCIKGAGGI RVTATNFCPP
101: SSTSPNPWCN PPQKHFDLSQ YMFLKFAIYQ GGVVPVKFRR VYCYKKGGMK FEIKGNPYWI LVLVYNVGGL GDVSNVKVKG SRTDWIQMQR NWGQNWETGV
201: QLVGQGLSFQ VTTSDGRMVQ SDNIVPTNWE FGQTFEGRNF

Best Arabidopsis Sequence Match ( AT5G39300.1 )
(BLAST)

001: MKLLEQMVYV ECFMIIMATL LVSMSYGHRA MINDVAEAPV IDNVGSPTNG LDSSWYDARA TFYGDIHGGE TQQGACGYGD LFKQGYGLET AALSTALFNE
101: GYTCGACYQI MCVHDPQWCL PGTIKITATN FCPPDYSKTE GVWCNPPQKH FDLSLPMFLK IAQYKAGVVP VKYRRISCAR TGGVKFETKG NPYFLMILPY
201: NVGGAGDIKL MQVKGDKTGW ITMQKNWGQN WTTGVNLTGQ GISFRVTTSD GVTKDFNNVM PNNWGFGQTF DGKINF

Arabidopsis Description

EXPA25Expansin-A25 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL77]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.