Factsheet for VIT_14s0068g00600.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g115310.1.1	Tomato	extracellular	68.92	66.8
KRH01265	Soybean	extracellular	60.56	66.67
Solyc03g115270.1.1	Tomato	extracellular	68.13	66.02
VIT_07s0005g04850.t01	Wine grape	extracellular	61.75	64.58
KRH44992	Soybean	extracellular	66.53	64.48
Solyc03g115350.1.1	Tomato	extracellular	65.74	63.95
Solyc03g115300.1.1	Tomato	extracellular	64.54	62.55
Solyc03g115320.1.1	Tomato	extracellular	64.54	62.31
Solyc03g115340.1.1	Tomato	mitochondrion	43.43	61.58
TraesCS7B01G218200.1	Wheat	cytosol, extracellular, plastid	55.38	56.05
TraesCS7D01G314100.1	Wheat	extracellular	56.57	55.04
HORVU7Hr1G075680.1	Barley	extracellular	56.57	55.04
EES14420	Sorghum	extracellular	55.78	52.63
GSMUA_Achr4P27910_001	Banana	extracellular	50.6	51.63
GSMUA_Achr4P27950_001	Banana	extracellular	50.2	51.22
GSMUA_Achr4P28010_001	Banana	extracellular	49.4	50.41
Zm00001d035083_P001	Maize	extracellular	54.18	49.1
VIT_02s0025g04700.t01	Wine grape	extracellular	49.4	46.97
VIT_19s0014g02910.t01	Wine grape	extracellular	46.22	45.14
PGSC0003DMT400063359	Potato	cytosol, plastid, vacuole	61.75	37.8
Os12t0546800-01	Rice	plasma membrane	42.23	36.55
PGSC0003DMT400063363	Potato	extracellular	68.53	35.25

Protein Annotations

EntrezGene:100261723	wikigene:100261723	Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.1	UniProt:A5AUC8
EMBL:AM435962	ProteinID:CAN62830	ProteinID:CAN62830.1	ProteinID:CCB46949	ProteinID:CCB46949.1	InterPro:Expan_Lol_pI
InterPro:Expansin	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	EMBL:FN595232	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0008150	GO:GO:0009664	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0030312	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749
InterPro:IPR036908	EntrezGene:LOC100261723	wikigene:LOC100261723	PFAM:PF01357	PFAM:PF03330	PRINTS:PR01225
PRINTS:PR01226	PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31867	PANTHER:PTHR31867:SF33	InterPro:RlpA-like_DPBB
InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI000151F5E9	ArrayExpress:VIT_14s0068g00600	EnsemblPlantsGene:VIT_14s0068g00600	EnsemblPlants:VIT_14s0068g00600.t01	RefSeq:XP_002276640	RefSeq:XP_002276640.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr14:-:24335233..24336088

Molecular Weight (calculated)

27687.2 Da

IEP (calculated)

8.385

GRAVY (calculated)

-0.132

Length

251 amino acids

Sequence
(BLAST)

001: MAGSHFLLGG AMFTALLLLG LASSQTGWYD AHATFYGDMQ GNETMQGACG YGDLFKQGYG LETTALSTAL FDNGLSCGAC FEIKCVNDPQ WCIPDAGTIT
101: VTATNFCPPN YSKPTGNWCN PPLQHFDLSM PMFVRIAKYK AGIIPVQYRR VRCHKRGGIK FEIKGNRYWV LVLVFNVGGV GDVSNVKIKG SNTQWLQMSR
201: NWGQNWEVGV VLVGQSLSFQ VTTRDQKMVQ SDNVAPADWK FGQTFEGKSN F

Best Arabidopsis Sequence Match ( AT5G39280.1 )
(BLAST)

001: MNLLGKMIYV EGFMMIMATL LVSMSYGHRA MINDVAEAPV FDDVVSPNGL DSSWYDARAT FYGDIHGGET QQGACGYGDL FKQGYGLETA ALSTALFNEG
101: YTCGACYQIM CVNDPQWCLP GSVKITATNF CPPDYSKTEG VWCNPPQKHF DLSLPMFLKI AQYKAGVVPV KYRRISCART GGVKFETKGN PYFLMILPYN
201: VGGAGDIKLM QVKGDKTGWI TMQKNWGQNW TTGVNLTGQG ISFRVTTSDG VTKDFNNVMP NNWGFGQTFD GKINF

Arabidopsis Description

EXPA23Expansin-A23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL79]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.