Factsheet for Bra030353.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
plastid 1
extracellular 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15952	Canola	extracellular	100.0	100.0
CDX99666	Canola	extracellular	98.04	92.94
Bra028232.1-P	Field mustard	extracellular	66.67	62.5
AT5G39310.1	Thale cress	extracellular	74.9	61.22
VIT_07s0005g04850.t01	Wine grape	extracellular	56.08	59.58
Bra023523.1-P	Field mustard	cytosol	54.12	58.97
Bra025397.1-P	Field mustard	extracellular	57.25	58.63
Bra033099.1-P	Field mustard	extracellular	56.47	58.54
KRH01265	Soybean	extracellular	49.8	55.7
Solyc03g115310.1.1	Tomato	extracellular	56.08	55.21
Solyc03g115270.1.1	Tomato	extracellular	55.69	54.83
KRH44992	Soybean	extracellular	55.69	54.83
Solyc03g115350.1.1	Tomato	extracellular	54.9	54.26
Solyc03g115320.1.1	Tomato	extracellular	55.29	54.23
Solyc03g115300.1.1	Tomato	extracellular	54.12	53.28
Solyc03g115340.1.1	Tomato	mitochondrion	35.69	51.41
Bra025800.1-P	Field mustard	cytosol, extracellular, plastid	12.55	50.79
Bra033068.1-P	Field mustard	cytosol	18.43	49.47
Bra000142.1-P	Field mustard	extracellular	31.37	48.48
TraesCS7B01G218200.1	Wheat	cytosol, extracellular, plastid	45.49	46.77
GSMUA_Achr4P27950_001	Banana	extracellular	44.31	45.94
GSMUA_Achr4P28010_001	Banana	extracellular	44.31	45.94
HORVU7Hr1G075680.1	Barley	extracellular	45.88	45.35
TraesCS7D01G314100.1	Wheat	extracellular	45.88	45.35
Bra027249.1-P	Field mustard	cytosol, extracellular, plastid	40.78	45.22
GSMUA_Achr4P27910_001	Banana	extracellular	43.53	45.12
Bra036638.1-P	Field mustard	extracellular, mitochondrion, nucleus, plastid	41.57	44.17
EES14420	Sorghum	extracellular	45.49	43.61
Bra016473.1-P	Field mustard	extracellular	28.63	42.94
Zm00001d035083_P001	Maize	extracellular	45.1	41.52
Bra026965.1-P	Field mustard	extracellular	42.35	41.06
Bra019775.1-P	Field mustard	extracellular	42.35	41.06
Bra016767.1-P	Field mustard	extracellular	42.35	41.06
Bra001593.1-P	Field mustard	extracellular	39.61	40.24
Os12t0546800-01	Rice	plasma membrane	38.43	33.79
PGSC0003DMT400063359	Potato	cytosol, plastid, vacuole	51.37	31.95
PGSC0003DMT400063363	Potato	extracellular	55.69	29.1

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.1	EnsemblPlantsGene:Bra030353	EnsemblPlants:Bra030353.1	EnsemblPlants:Bra030353.1-P
InterPro:Expan_Lol_pI	InterPro:Expansin	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0008150	GO:GO:0009664	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0030312	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749
InterPro:IPR036908	UniProt:M4ENI3	PFAM:PF01357	PFAM:PF03330	PRINTS:PR01225	PRINTS:PR01226
PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31867	PANTHER:PTHR31867:SF70	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf
SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685	UniParc:UPI0002543A4F	SEG:seg	:

Description

AT5G39310 (E=4e-110) ATEXPA24, EXP24, ATEXP24, ATHEXP ALPHA 1.19 | ATEXPA24 (ARABIDOPSIS THALIANA EXPANSIN A24)

Coordinates

chrA04:-:8923119..8924340

Molecular Weight (calculated)

27870.3 Da

IEP (calculated)

8.833

GRAVY (calculated)

-0.305

Length

255 amino acids

Sequence
(BLAST)

001: MAMVIWIVPM TYGHGHGHGH GHGHGHHAPV AGWLDARATF YGDINGGQTH QGACGYGDLH KQGFGLATAA LSTALFNNGY TCGACYEIKC ANSPQWCLPG
101: SIKITATNFC PPDPSNKKDS WCNPPQKHFD LSQPMFLKIA QYKAGVVPVR YRRVHCTKTG GVKFEIKGNP HFVMVLPYNV GGAGDIKELC IKGTKTDWIK
201: MQKNWGQIWN SGVVMTGQCL SFRITTSDGS TKDFMDVTPT NWGFNGQAFD GKINF

Best Arabidopsis Sequence Match ( AT5G39310.1 )
(BLAST)

001: MELLKRKLYA KILMMVMVIW IAPMTNGHDH ASHVPGGRPG AHPSHGAHPA HGAHPSHGAH PSHGAHPSHG AHPSHGALPS HGGQVPHSGW GHGRATFYGD
101: INGGETQQGA CGYGDLHKQG YGLETAALST ALFNNGSRCG ACYEIMCEHA PQWCLPGSIK ITATNFCPPD FTKPNDNWCN PPQKHFDLSQ PMFLKIAKYK
201: AGVVPVKFRR VPCAKIGGVK FEIKGNPHFL MILPYNVGGA GAVRAMQIKG TRTQWIAMKK NWGQIWSTGV VLTGQCLSFR LTTSDGVMKE FIDVTPPDWK
301: CNGQSFDGKV NF

Arabidopsis Description

EXPA24Expansin-A24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL76]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.