Factsheet for Os06t0718100-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

nucleus: 26035336
plastid: 27992503

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66063	Canola	cytosol, extracellular, plastid	43.35	69.09
Os10t0439100-00	Rice	extracellular	62.74	64.71
Os03t0428700-01	Rice	extracellular	62.36	64.06
Os01t0248900-01	Rice	extracellular	60.46	63.35
TraesCS3A01G031700.1	Wheat	extracellular	49.43	62.8
Os01t0249100-00	Rice	extracellular	51.71	62.39
Os03t0155900-01	Rice	extracellular	58.56	61.85
Os03t0156000-00	Rice	extracellular	57.41	60.64
Bra016473.1-P	Field mustard	extracellular	38.78	60.0
Os03t0156300-00	Rice	extracellular	53.99	59.17
KRH51669	Soybean	extracellular	56.65	59.13
Os05t0276500-01	Rice	extracellular	55.89	57.65
Os05t0277000-00	Rice	extracellular	52.47	55.65
TraesCS3D01G030100.1	Wheat	extracellular	41.06	52.68
Os10t0535900-00	Rice	extracellular	50.95	50.38
Solyc07g063210.2.1	Tomato	extracellular	46.77	48.05
VIT_19s0014g02910.t01	Wine grape	extracellular	44.87	45.91
AT3G15370.2	Thale cress	extracellular	48.29	45.04
Os06t0108600-00	Rice	extracellular	42.21	41.42
Os12t0546800-01	Rice	plasma membrane	36.12	32.76
PGSC0003DMT400032334	Potato	cytosol, nucleus, vacuole	46.39	27.42

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.1	EntrezGene:4342086	ProteinID:AAL79710.1	ProteinID:AAM73778.1
EMBL:AK070133	ProteinID:BAD61725.1	ProteinID:BAF20513.1	ProteinID:BAS99525.1	EMBL:DQ061068	InterPro:Expan_Lol_pI
InterPro:Expansin	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0005575	GO:GO:0005576
GO:GO:0005618	GO:GO:0005623	GO:GO:0008150	GO:GO:0009664	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0030312	GO:GO:0071555	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749
InterPro:IPR036908	EnsemblPlantsGene:Os06g0718100	EnsemblPlants:Os06t0718100-01	PFAM:PF01357	PFAM:PF03330	PRINTS:PR01225
PRINTS:PR01226	PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31867	PANTHER:PTHR31867:SF8	UniProt:Q4PR39
InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI00000A4F0A	RefSeq:XP_015642522.1	SEG:seg	:	:

Description

ALPHA-EXPANSIN 29Similar to Alpha-expansin precursor. (Os06t0718100-01)

Coordinates

chr6:+:30520195..30521345

Molecular Weight (calculated)

28038.1 Da

IEP (calculated)

9.272

GRAVY (calculated)

-0.031

Length

263 amino acids

Sequence
(BLAST)

001: MARRGHVFAV VAFVSYALLA AASTTVEAFA ASGWSKGTAT FYGGSDASGT MGGACGYGNL YTQGYGTRTA ALSTALFDDG ASCGQCYALT CDARADPRWC
101: RAGASVTVTA TNFCPPNYAL PSDDGGWCNP PRPHFDMAQP AWERIGVYRG GIVPVAFRRV PCRRRGGVRF TVAGRDYFEL VLVTNVAAAG SVRSMEVRGS
201: RRGAGWMAMS RNWGANWQSL AYLDGQGLSF RVTATDGQTI VFAGVVPPSW RFGQTFASTQ QFM

Best Arabidopsis Sequence Match ( AT1G20190.1 )
(BLAST)

001: MSKSLAGLAV LAALFIAVDA FRPSGLTNGH ATFYGGSDAS GTMGGACGYG DLYSAGYGTM TAALSTALFN DGASCGECYR ITCDHAADSR WCLKGASVVI
101: TATNFCPPNF ALPNNNGGWC NPPLKHFDMA QPAWEKIGIY RGGIVPVVFQ RVSCYKKGGV RFRINGRDYF ELVNIQNVGG AGSIKSVSIK GSKTGWLAMS
201: RNWGANWQSN AYLDGQALSF SITTTDGATR VFLNVVPSSW SFGQIYSSNV QF

Arabidopsis Description

EXPA11Expansin-A11 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.