Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 8
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036638.1-P | Field mustard | extracellular, mitochondrion, nucleus, plastid | 81.32 | 87.08 |
| CDY64890 | Canola | extracellular | 86.38 | 86.38 |
| CDY69805 | Canola | extracellular | 50.19 | 83.77 |
| PGSC0003DMT400032527 | Potato | extracellular | 55.25 | 68.27 |
| AT1G12560.1 | Thale cress | extracellular | 67.32 | 66.03 |
| PGSC0003DMT400058522 | Potato | plastid | 60.7 | 63.67 |
| KRH77459 | Soybean | extracellular | 61.48 | 60.77 |
| KRH27987 | Soybean | extracellular | 61.09 | 60.38 |
| VIT_02s0025g04700.t01 | Wine grape | extracellular | 61.87 | 60.23 |
| KRH04002 | Soybean | extracellular | 61.87 | 60.0 |
| Solyc08g080060.2.1 | Tomato | extracellular | 62.26 | 59.48 |
| Zm00001d047353_P001 | Maize | extracellular | 57.59 | 57.36 |
| GSMUA_Achr10P... | Banana | extracellular | 57.59 | 56.92 |
| GSMUA_Achr5P20270_001 | Banana | extracellular | 57.98 | 56.44 |
| EER94586 | Sorghum | extracellular | 57.59 | 56.06 |
| TraesCS1D01G203100.1 | Wheat | extracellular | 56.42 | 55.98 |
| TraesCS1A01G199400.1 | Wheat | extracellular | 56.03 | 55.6 |
| Os10t0535900-00 | Rice | extracellular | 56.81 | 54.89 |
| TraesCS1B01G214300.1 | Wheat | extracellular | 55.64 | 54.79 |
| TraesCS1B01G214200.1 | Wheat | extracellular | 55.64 | 54.79 |
| KRH57276 | Soybean | extracellular | 47.08 | 52.84 |
| TraesCS1A01G199300.1 | Wheat | cytosol, extracellular, peroxisome, plastid | 56.03 | 51.25 |
| Solyc08g007780.2.1 | Tomato | extracellular | 21.4 | 43.31 |
| AT5G39300.1 | Thale cress | extracellular | 45.53 | 42.39 |
| AT5G39290.1 | Thale cress | extracellular | 45.53 | 41.94 |
| AT5G39270.1 | Thale cress | extracellular | 45.53 | 41.94 |
| AT5G39280.1 | Thale cress | extracellular | 44.75 | 41.82 |
| AT5G39260.1 | Thale cress | extracellular | 40.47 | 39.69 |
| AT3G15370.2 | Thale cress | extracellular | 42.41 | 38.65 |
| AT5G39310.1 | Thale cress | extracellular | 40.47 | 33.33 |
| HORVU1Hr1G051590.1 | Barley | plastid | 18.29 | 15.67 |
Protein Annotations
| Gene3D:2.40.40.10 | Gene3D:2.60.40.760 | MapMan:21.4.2.1 | EntrezGene:842601 | ProteinID:AAF75810.1 | ProteinID:AEE34031.1 |
| EMBL:AF332444 | EMBL:AK227678 | ArrayExpress:AT1G62980 | EnsemblPlantsGene:AT1G62980 | RefSeq:AT1G62980 | TAIR:AT1G62980 |
| RefSeq:AT1G62980-TAIR-G | EnsemblPlants:AT1G62980.1 | TAIR:AT1G62980.1 | Symbol:ATEXPA18 | EMBL:BT006412 | InterPro:Expan_Lol_pI |
| InterPro:Expansin | InterPro:Expansin/allergen_DPBB_dom | InterPro:Expansin_CBD | InterPro:Expansin_CBD_sf | GO:GO:0005575 | GO:GO:0005576 |
| GO:GO:0005618 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0009664 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016043 | GO:GO:0030312 | GO:GO:0071555 | InterPro:IPR007112 | InterPro:IPR007117 | InterPro:IPR036749 |
| InterPro:IPR036908 | RefSeq:NP_176486.1 | PFAM:PF01357 | PFAM:PF03330 | PO:PO:0000256 | PO:PO:0000262 |
| PO:PO:0009005 | PRINTS:PR01225 | PRINTS:PR01226 | PFscan:PS50842 | PFscan:PS50843 | PANTHER:PTHR31867 |
| PANTHER:PTHR31867:SF2 | UniProt:Q0WT83 | UniProt:Q9LQ07 | InterPro:RlpA-like_DPBB | InterPro:RlpA-like_sf | SMART:SM00837 |
| SUPFAM:SSF49590 | SUPFAM:SSF50685 | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI000012A2B8 | : |
Description
EXPA18Expansin-A18 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ07]
Coordinates
chr1:+:23331563..23333246
Molecular Weight (calculated)
27871.2 Da
IEP (calculated)
9.454
GRAVY (calculated)
-0.141
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQNLYRKCL VILSMMAMIG TSMATYAGTP WRTASATFYG DDTGSATMGG ACGYGNMYDS GYGVATTALS TALFNEGYAC GQCFQLKCVS SPNCYYGSPA
101: TVVTATNICP PNYGQASNNG GWCNPPRVHF DLTKPAFMKI ANWKAGIIPV SYRRVACKKI GGIRFKFEGN GYWLLVYVMN VGGPGDIKTM AVKGSRTGWI
201: NMSHNWGASY QAFSSLYGQS LSFRLTSYTT RQTIYAYNAA PASWSAGKTY QSKANFN
101: TVVTATNICP PNYGQASNNG GWCNPPRVHF DLTKPAFMKI ANWKAGIIPV SYRRVACKKI GGIRFKFEGN GYWLLVYVMN VGGPGDIKTM AVKGSRTGWI
201: NMSHNWGASY QAFSSLYGQS LSFRLTSYTT RQTIYAYNAA PASWSAGKTY QSKANFN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.