Factsheet for PGSC0003DMT400032527

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	extracellular
PProwler:	mitochondrion
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058522	Potato	plastid	81.25	68.98
KRH04002	Soybean	extracellular	76.92	60.38
VIT_02s0025g04700.t01	Wine grape	extracellular	76.44	60.23
KRH77459	Soybean	extracellular	75.0	60.0
KRH27987	Soybean	extracellular	74.04	59.23
Bra036638.1-P	Field mustard	extracellular, mitochondrion, nucleus, plastid	67.31	58.33
GSMUA_Achr10P...	Banana	extracellular	70.19	56.15
GSMUA_Achr5P20270_001	Banana	extracellular	71.15	56.06
Zm00001d047353_P001	Maize	extracellular	69.23	55.81
CDX98053	Canola	extracellular	70.19	55.51
Bra019775.1-P	Field mustard	extracellular	70.19	55.51
AT1G62980.1	Thale cress	extracellular	68.27	55.25
CDY57071	Canola	extracellular	69.71	55.13
EER94586	Sorghum	extracellular	69.23	54.55
CDY64890	Canola	extracellular	67.31	54.47
CDY58613	Canola	extracellular	68.27	53.99
CDY21056	Canola	extracellular	68.27	53.99
CDY16014	Canola	extracellular	68.27	53.99
Bra026965.1-P	Field mustard	extracellular	68.27	53.99
Bra016767.1-P	Field mustard	extracellular	68.27	53.99
AT1G12560.1	Thale cress	extracellular	67.79	53.82
TraesCS1A01G199400.1	Wheat	extracellular	66.35	53.28
TraesCS1D01G203100.1	Wheat	extracellular	66.35	53.28
TraesCS1B01G214200.1	Wheat	extracellular	65.87	52.49
TraesCS1B01G214300.1	Wheat	extracellular	65.87	52.49
Os10t0535900-00	Rice	extracellular	65.87	51.5
KRH57276	Soybean	extracellular	54.81	49.78
TraesCS1A01G199300.1	Wheat	cytosol, extracellular, peroxisome, plastid	65.87	48.75
CDY69805	Canola	extracellular	36.06	48.7
Solyc08g007780.2.1	Tomato	extracellular	29.33	48.03
PGSC0003DMT400063359	Potato	cytosol, plastid, vacuole	51.92	26.34
PGSC0003DMT400063363	Potato	extracellular	51.44	21.93
PGSC0003DMT400032334	Potato	cytosol, nucleus, vacuole	46.63	21.8
HORVU1Hr1G051590.1	Barley	plastid	16.35	11.33

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.1	InterPro:Expan_Lol_pI	InterPro:Expansin	InterPro:Expansin/allergen_DPBB_dom
InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623
GO:GO:0008150	GO:GO:0009664	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030312
InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908	UniProt:M1AXK9	PFAM:PF01357
PFAM:PF03330	EnsemblPlantsGene:PGSC0003DMG400012495	PGSC:PGSC0003DMG400012495	EnsemblPlants:PGSC0003DMT400032527	PRINTS:PR01225	PRINTS:PR01226
PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31867	PANTHER:PTHR31867:SF2	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf
SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685	UniParc:UPI00029493C5	:	:

Description

Alpha-expansin 7 [Source:PGSC_GENE;Acc:PGSC0003DMG400012495]

Coordinates

chr8:-:142611..144260

Molecular Weight (calculated)

22296.6 Da

IEP (calculated)

9.241

GRAVY (calculated)

-0.009

Length

208 amino acids

Sequence
(BLAST)

001: VGGACGFGNL VTSGYGTDTA ALSSVLYNKG FACGQCFQIK CVQSDSCYST IVTVTATNLC PPNPAQDSNN GGWCNPPRTH FDMAKPAFMK IAQWKAGIVP
101: VSYRRVPCVK KGGIKFSLQG NGYWLLVYVM NVGGSGDIAS MWVKGTKTSW LAMSHNWGAS YQAFATLSGQ TLSFKITSYT SKETIIATNV APSSWQVGMT
201: YQANVNFN

Best Arabidopsis Sequence Match ( AT1G62980.1 )
(BLAST)

001: MDQNLYRKCL VILSMMAMIG TSMATYAGTP WRTASATFYG DDTGSATMGG ACGYGNMYDS GYGVATTALS TALFNEGYAC GQCFQLKCVS SPNCYYGSPA
101: TVVTATNICP PNYGQASNNG GWCNPPRVHF DLTKPAFMKI ANWKAGIIPV SYRRVACKKI GGIRFKFEGN GYWLLVYVMN VGGPGDIKTM AVKGSRTGWI
201: NMSHNWGASY QAFSSLYGQS LSFRLTSYTT RQTIYAYNAA PASWSAGKTY QSKANFN

Arabidopsis Description

EXPA18Expansin-A18 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ07]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.