Factsheet for TraesCS1B01G214300.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G199400.1	Wheat	extracellular	98.08	98.84
TraesCS1D01G203100.1	Wheat	extracellular	97.32	98.07
TraesCS1B01G214200.1	Wheat	extracellular	97.7	97.7
TraesCS1A01G199300.1	Wheat	cytosol, extracellular, peroxisome, plastid	97.32	90.39
Os10t0535900-00	Rice	extracellular	74.71	73.31
Zm00001d047353_P001	Maize	extracellular	72.41	73.26
EER94586	Sorghum	extracellular	72.03	71.21
GSMUA_Achr10P...	Banana	extracellular	66.28	66.54
PGSC0003DMT400032527	Potato	extracellular	52.49	65.87
PGSC0003DMT400058522	Potato	plastid	59.39	63.27
KRH77459	Soybean	extracellular	62.45	62.69
Bra036638.1-P	Field mustard	extracellular, mitochondrion, nucleus, plastid	57.47	62.5
KRH27987	Soybean	extracellular	62.07	62.31
KRH04002	Soybean	extracellular	63.22	62.26
GSMUA_Achr5P20270_001	Banana	extracellular	62.07	61.36
AT1G12560.1	Thale cress	extracellular	60.92	60.69
Bra026965.1-P	Field mustard	extracellular	60.92	60.46
CDY16014	Canola	extracellular	60.92	60.46
VIT_02s0025g04700.t01	Wine grape	extracellular	60.54	59.85
CDY21056	Canola	extracellular	59.77	59.32
CDX98053	Canola	extracellular	59.77	59.32
CDY58613	Canola	extracellular	59.77	59.32
Bra019775.1-P	Field mustard	extracellular	59.77	59.32
Bra016767.1-P	Field mustard	extracellular	59.77	59.32
CDY57071	Canola	extracellular	59.77	59.32
CDY64890	Canola	extracellular	57.47	58.37
Solyc08g080060.2.1	Tomato	extracellular	59.39	57.62
AT1G62980.1	Thale cress	extracellular	54.79	55.64
CDY69805	Canola	extracellular	31.8	53.9
KRH57276	Soybean	extracellular	45.98	52.4
TraesCS3B01G199900.1	Wheat	extracellular	47.89	49.8
TraesCS3B01G348000.1	Wheat	extracellular	46.74	49.0
TraesCS3B01G347900.1	Wheat	extracellular	45.21	47.39
TraesCS1B01G156700.1	Wheat	extracellular	45.59	47.22
TraesCS5B01G548500.1	Wheat	extracellular	45.98	47.06
TraesCS4B01G271300.1	Wheat	extracellular	44.83	46.06
TraesCS5B01G528500.1	Wheat	extracellular	44.06	45.28
TraesCS7B01G218200.1	Wheat	cytosol, extracellular, plastid	42.91	45.16
TraesCS3B01G200100.1	Wheat	extracellular	44.06	45.1
Solyc08g007780.2.1	Tomato	extracellular	21.84	44.88
TraesCS4B01G272800.1	Wheat	extracellular	42.91	44.27
TraesCS5B01G528700.1	Wheat	extracellular	43.3	44.14
TraesCS5B01G528600.1	Wheat	extracellular, plastid, vacuole	28.74	43.1
TraesCS4B01G272700.1	Wheat	extracellular	41.76	43.08
TraesCS4B01G272600.1	Wheat	extracellular	41.38	42.69
TraesCS5B01G528400.1	Wheat	extracellular	23.75	35.63
TraesCS7B01G293800.1	Wheat	extracellular	21.46	27.86

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.1	InterPro:Expan_Lol_pI	InterPro:Expansin	InterPro:Expansin/allergen_DPBB_dom
InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0005575	GO:GO:0005576	GO:GO:0008150	GO:GO:0009664
GO:GO:0009987	GO:GO:0016043	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908
PFAM:PF01357	PFAM:PF03330	PRINTS:PR01225	PRINTS:PR01226	PFscan:PS50842	PFscan:PS50843
PANTHER:PTHR31867	PANTHER:PTHR31867:SF2	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590
SUPFAM:SSF50685	SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1B01G214300	EnsemblPlants:TraesCS1B01G214300.1	SEG:seg

Description

No Description!

Coordinates

chr1B:+:389089837..389090716

Molecular Weight (calculated)

27684.1 Da

IEP (calculated)

8.712

GRAVY (calculated)

0.080

Length

261 amino acids

Sequence
(BLAST)

001: MASAASKSKS AAVLVLLVSL AGVATTVDAR FRAMQWTPAH ATFYGDEATA ETMGGACGYD ITAGYGADTA ALSSTLFLDG YGCGTCYQIR CLKATACYRG
101: SPVITVTATN LCPPNWAQDT NNGGWCNPPR THFDLAIPAF KKMADWHAGI VPVMYRRVPC MRKGGIRFAF QGNPHWLLVY VTNVGGAGDV GEMWVKGNGG
201: MGWLSMSHNW GASYQAFGQL GGQALSFKLT SYTTGLTIIA ADAAPASWSI GLTYQARANF K

Best Arabidopsis Sequence Match ( AT1G12560.1 )
(BLAST)

001: MGPISSSWSF NKFFSIVFVV FAISGEFVAG YYRPGPWRYA HATFYGDETG GETMGGACGY GNLFNSGYGL STAALSTTLF NDGYGCGQCF QITCSKSPHC
101: YSGKSTVVTA TNLCPPNWYQ DSNAGGWCNP PRTHFDMAKP AFMKLAYWRA GIIPVAYRRV PCQRSGGMRF QFQGNSYWLL IFVMNVGGAG DIKSMAVKGS
201: RTNWISMSHN WGASYQAFSS LYGQSLSFRV TSYTTGETIY AWNVAPANWS GGKTYKSTAN FR

Arabidopsis Description

EXPA7EXPA7 [Source:UniProtKB/TrEMBL;Acc:A0A178W749]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.