Factsheet for TraesCS4B01G272600.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

mitochondrion 1
extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G072660.1	Barley	extracellular	97.23	97.23
TraesCS4B01G272800.1	Wheat	extracellular	96.44	96.44
TraesCS4B01G272700.1	Wheat	extracellular	94.86	94.86
HORVU4Hr1G072580.1	Barley	extracellular	95.65	88.0
TraesCS5B01G528700.1	Wheat	extracellular	85.77	84.77
TraesCS5B01G528500.1	Wheat	extracellular	83.4	83.07
TraesCS4B01G271300.1	Wheat	extracellular	81.03	80.71
TraesCS5B01G528600.1	Wheat	extracellular, plastid, vacuole	54.15	78.74
Zm00001d035101_P001	Maize	extracellular	62.85	75.0
Zm00001d035104_P001	Maize	cytosol, extracellular, plastid	62.85	75.0
TraesCS1B01G156700.1	Wheat	extracellular	74.31	74.6
Zm00001d035100_P001	Maize	extracellular	74.31	73.44
Zm00001d035108_P001	Maize	extracellular	73.52	73.23
Zm00001d035111_P001	Maize	extracellular	73.52	73.23
EES13271	Sorghum	extracellular	74.31	72.59
Zm00001d035102_P001	Maize	extracellular	72.73	72.44
Zm00001d035109_P001	Maize	extracellular	72.73	72.44
Zm00001d035112_P001	Maize	extracellular	58.1	72.06
EES13270	Sorghum	extracellular	73.91	71.92
EES14433	Sorghum	plastid	74.7	67.99
CDY66063	Canola	cytosol, extracellular, plastid	38.74	59.39
TraesCS3B01G348000.1	Wheat	extracellular	58.1	59.04
TraesCS5B01G548500.1	Wheat	extracellular	59.29	58.82
TraesCS3B01G347900.1	Wheat	extracellular	57.71	58.63
TraesCS3B01G199900.1	Wheat	extracellular	57.31	57.77
KRH51669	Soybean	extracellular	57.31	57.54
TraesCS3B01G200100.1	Wheat	extracellular	54.55	54.12
TraesCS5B01G528400.1	Wheat	extracellular	35.97	52.3
Bra016473.1-P	Field mustard	extracellular	34.78	51.76
Solyc07g063210.2.1	Tomato	extracellular	45.85	45.31
TraesCS7B01G218200.1	Wheat	cytosol, extracellular, plastid	42.29	43.15
VIT_19s0014g02910.t01	Wine grape	extracellular	42.69	42.02
TraesCS1B01G214200.1	Wheat	extracellular	43.08	41.76
AT3G15370.2	Thale cress	extracellular	46.25	41.49
TraesCS1B01G214300.1	Wheat	extracellular	42.69	41.38
TraesCS7B01G293800.1	Wheat	extracellular	21.34	26.87
PGSC0003DMT400032334	Potato	cytosol, nucleus, vacuole	45.06	25.62

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.1	InterPro:Expan_Lol_pI	InterPro:Expansin	InterPro:Expansin/allergen_DPBB_dom
InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0005575	GO:GO:0005576	GO:GO:0008150	GO:GO:0009664
GO:GO:0009987	GO:GO:0016043	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908
PFAM:PF01357	PFAM:PF03330	PRINTS:PR01225	PRINTS:PR01226	PFscan:PS50842	PFscan:PS50843
PANTHER:PTHR31867	PANTHER:PTHR31867:SF40	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590
SUPFAM:SSF50685	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS4B01G272600	EnsemblPlants:TraesCS4B01G272600.1	:	:

Description

No Description!

Coordinates

chr4B:-:550432193..550433196

Molecular Weight (calculated)

27738.8 Da

IEP (calculated)

7.189

GRAVY (calculated)

0.041

Length

253 amino acids

Sequence
(BLAST)

001: MAAGMRFLQL FAAVLAFCFA PTNSNWIPAT ATFYGGADGS DTMGGACEYE NLYVAGYGIN NVALSTALFN DGASCGQCYV IICDTSKSRM CKPGTSVTVS
101: ATNFCPPNWD LPSDNGGWCN PPRHHFDMSQ PAWENIGIYR AGIIPVFYQQ VKCWRQGGVR FTINGFNYFE LVLVANIAGS GSIKSMSVKG TNTAWIPMSR
201: NWGANWHCLS GLVGQALSFT ITSTGGQYLV FQDVVPAWWQ FGQTFTTWRQ FDY

Best Arabidopsis Sequence Match ( AT1G20190.1 )
(BLAST)

001: MSKSLAGLAV LAALFIAVDA FRPSGLTNGH ATFYGGSDAS GTMGGACGYG DLYSAGYGTM TAALSTALFN DGASCGECYR ITCDHAADSR WCLKGASVVI
101: TATNFCPPNF ALPNNNGGWC NPPLKHFDMA QPAWEKIGIY RGGIVPVVFQ RVSCYKKGGV RFRINGRDYF ELVNIQNVGG AGSIKSVSIK GSKTGWLAMS
201: RNWGANWQSN AYLDGQALSF SITTTDGATR VFLNVVPSSW SFGQIYSSNV QF

Arabidopsis Description

EXPA11Expansin-A11 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.