Factsheet for PGSC0003DMT400058522

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 3
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	extracellular
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g080060.2.1	Tomato	extracellular	96.33	87.73
PGSC0003DMT400032527	Potato	extracellular	68.98	81.25
VIT_02s0025g04700.t01	Wine grape	extracellular	74.29	68.94
KRH77459	Soybean	extracellular	71.43	67.31
Bra036638.1-P	Field mustard	extracellular, mitochondrion, nucleus, plastid	65.71	67.08
KRH27987	Soybean	extracellular	70.2	66.15
KRH04002	Soybean	extracellular	71.43	66.04
Bra016767.1-P	Field mustard	extracellular	69.39	64.64
CDY21056	Canola	extracellular	69.39	64.64
CDY58613	Canola	extracellular	68.98	64.26
GSMUA_Achr10P...	Banana	extracellular	68.16	64.23
Zm00001d047353_P001	Maize	extracellular	67.35	63.95
Bra019775.1-P	Field mustard	extracellular	68.57	63.88
CDX98053	Canola	extracellular	68.57	63.88
CDY69805	Canola	extracellular	40.0	63.64
CDY57071	Canola	extracellular	68.16	63.5
Bra026965.1-P	Field mustard	extracellular	67.35	62.74
CDY16014	Canola	extracellular	67.35	62.74
CDY64890	Canola	extracellular	65.71	62.65
AT1G12560.1	Thale cress	extracellular	66.53	62.21
EER94586	Sorghum	extracellular	66.94	62.12
GSMUA_Achr5P20270_001	Banana	extracellular	66.53	61.74
Os10t0535900-00	Rice	extracellular	66.53	61.28
AT1G62980.1	Thale cress	extracellular	63.67	60.7
TraesCS1A01G199400.1	Wheat	extracellular	63.27	59.85
TraesCS1D01G203100.1	Wheat	extracellular	63.27	59.85
TraesCS1B01G214300.1	Wheat	extracellular	63.27	59.39
TraesCS1B01G214200.1	Wheat	extracellular	62.45	58.62
KRH57276	Soybean	extracellular	53.88	57.64
TraesCS1A01G199300.1	Wheat	cytosol, extracellular, peroxisome, plastid	62.45	54.45
PGSC0003DMT400063359	Potato	cytosol, plastid, vacuole	46.53	27.8
PGSC0003DMT400063363	Potato	extracellular	51.43	25.82
PGSC0003DMT400032334	Potato	cytosol, nucleus, vacuole	42.45	23.37
HORVU1Hr1G051590.1	Barley	plastid	21.22	17.33

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.1	InterPro:Expan_Lol_pI	InterPro:Expansin	InterPro:Expansin/allergen_DPBB_dom
InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623
GO:GO:0008150	GO:GO:0009664	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030312
InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908	UniProt:M1C2T2	PFAM:PF01357
PFAM:PF03330	EnsemblPlantsGene:PGSC0003DMG400022732	PGSC:PGSC0003DMG400022732	EnsemblPlants:PGSC0003DMT400058522	PRINTS:PR01225	PRINTS:PR01226
PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31867	PANTHER:PTHR31867:SF2	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf
SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685	UniParc:UPI0002951CF7	:	:

Description

Alpha-expansin 7 [Source:PGSC_GENE;Acc:PGSC0003DMG400022732]

Coordinates

chr8:+:53742063..53743904

Molecular Weight (calculated)

26766.0 Da

IEP (calculated)

9.313

GRAVY (calculated)

-0.088

Length

245 amino acids

Sequence
(BLAST)

001: MAAPYYSTPT ISPTMFKAMP WKQAFATFYG DETASETMGG ACGYGNLFNS GYGTATAALS TVLFGNGYSC GQCFQIMCVK SKFCYTGFTT ITATNLCPPN
101: WSQDSNHGGW CNPPRQHFDM AKPAFMKIAQ WKAGIVPVSY RRVPCVKKGG IKFALQGNGY WLLVYVMNVA GGGDVASMWV KGSKTGWMSM SHNWGASYQA
201: FATLSGQTLS FKLTSYTSHE TIIVNNVAPS NWRVGMTYQA NVNFH

Best Arabidopsis Sequence Match ( AT1G12560.1 )
(BLAST)

001: MGPISSSWSF NKFFSIVFVV FAISGEFVAG YYRPGPWRYA HATFYGDETG GETMGGACGY GNLFNSGYGL STAALSTTLF NDGYGCGQCF QITCSKSPHC
101: YSGKSTVVTA TNLCPPNWYQ DSNAGGWCNP PRTHFDMAKP AFMKLAYWRA GIIPVAYRRV PCQRSGGMRF QFQGNSYWLL IFVMNVGGAG DIKSMAVKGS
201: RTNWISMSHN WGASYQAFSS LYGQSLSFRV TSYTTGETIY AWNVAPANWS GGKTYKSTAN FR

Arabidopsis Description

EXPA7EXPA7 [Source:UniProtKB/TrEMBL;Acc:A0A178W749]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.