Factsheet for TraesCS1A01G406900.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G345000.1	Wheat	extracellular	100.0	100.0
TraesCS5D01G527700.1	Wheat	extracellular	98.03	97.65
TraesCS5B01G528500.1	Wheat	extracellular	96.85	96.85
HORVU5Hr1G119860.2	Barley	extracellular	95.28	95.28
TraesCS1A01G406800.1	Wheat	extracellular	95.67	94.92
TraesCS4A01G345100.1	Wheat	extracellular	82.68	93.33
TraesCS4A01G034200.1	Wheat	extracellular	89.76	89.76
HORVU5Hr1G119670.1	Barley	extracellular	96.46	87.19
TraesCS4A01G032600.1	Wheat	extracellular	85.43	85.77
HORVU5Hr1G119680.4	Barley	extracellular	94.88	85.16
Os03t0155900-01	Rice	extracellular	71.26	72.69
Os03t0156000-00	Rice	extracellular	70.87	72.29
Zm00001d035101_P001	Maize	extracellular	59.45	71.23
Os03t0156300-00	Rice	extracellular	66.93	70.83
Zm00001d035104_P001	Maize	cytosol, extracellular, plastid	59.06	70.75
Zm00001d035111_P001	Maize	extracellular	70.08	70.08
Zm00001d035108_P001	Maize	extracellular	69.69	69.69
Zm00001d035102_P001	Maize	extracellular	69.69	69.69
Zm00001d035109_P001	Maize	extracellular	68.9	68.9
Zm00001d035100_P001	Maize	extracellular	69.29	68.75
EES13271	Sorghum	extracellular	69.29	67.95
Zm00001d035112_P001	Maize	extracellular	54.33	67.65
EES13270	Sorghum	extracellular	68.5	66.92
EES14433	Sorghum	plastid	69.29	63.31
TraesCS4A01G339200.1	Wheat	extracellular	62.2	61.96
TraesCS3A01G317900.1	Wheat	extracellular	60.63	61.85
TraesCS3A01G318000.1	Wheat	extracellular	60.24	61.45
TraesCS3A01G318100.1	Wheat	extracellular	59.84	61.04
TraesCS3A01G165900.1	Wheat	extracellular	58.66	60.32
CDY66063	Canola	cytosol, extracellular, plastid	38.98	60.0
KRH51669	Soybean	extracellular	57.09	57.54
TraesCS3A01G165600.1	Wheat	extracellular	55.12	54.9
TraesCS3A01G031700.1	Wheat	extracellular	43.31	53.14
Bra016473.1-P	Field mustard	extracellular	35.04	52.35
Solyc07g063210.2.1	Tomato	extracellular	46.85	46.48
VIT_19s0014g02910.t01	Wine grape	extracellular	45.28	44.75
TraesCS1A01G199400.1	Wheat	extracellular	45.28	44.4
TraesCS1A01G199300.1	Wheat	cytosol, extracellular, peroxisome, plastid	45.67	41.28
AT3G15370.2	Thale cress	extracellular	45.67	41.13
TraesCS4A01G470100.1	Wheat	extracellular	41.34	37.91
TraesCS7A01G022400.1	Wheat	extracellular	40.55	36.92
PGSC0003DMT400032334	Potato	cytosol, nucleus, vacuole	46.06	26.29

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.1	InterPro:Expan_Lol_pI	InterPro:Expansin	InterPro:Expansin/allergen_DPBB_dom
InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0005575	GO:GO:0005576	GO:GO:0008150	GO:GO:0009664
GO:GO:0009987	GO:GO:0016043	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908
PFAM:PF01357	PFAM:PF03330	PRINTS:PR01225	PRINTS:PR01226	PFscan:PS50842	PFscan:PS50843
PANTHER:PTHR31867	PANTHER:PTHR31867:SF40	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590
SUPFAM:SSF50685	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS1A01G406900	EnsemblPlants:TraesCS1A01G406900.1	SEG:seg	:

Description

No Description!

Coordinates

chr1A:-:569376431..569377316

Molecular Weight (calculated)

27532.6 Da

IEP (calculated)

7.565

GRAVY (calculated)

0.059

Length

254 amino acids

Sequence
(BLAST)

001: MAAGMRFLQL FATVLAFCFV PAKSGYWLPA HATFYGGADG SDTMGGACGY ENLYNAGYGI NNAALSTALF NNGLSCGQCY LITCDTSKSN MCKPGTSITV
101: SATNFCPPNW ALPSDNGGWC NPPRVHFDMS QPAWENLAIY RAGIVPVLYQ QVACQRQGGL RFTISGFNYF ELVLVTNMAG SGSVKSMSVK GTNTAWIPMS
201: QNWGANWQCL AGLQGQALSF AITSSGGQYK VFQDVVPAWW LFGQTFSTWQ QFDY

Best Arabidopsis Sequence Match ( AT1G20190.1 )
(BLAST)

001: MSKSLAGLAV LAALFIAVDA FRPSGLTNGH ATFYGGSDAS GTMGGACGYG DLYSAGYGTM TAALSTALFN DGASCGECYR ITCDHAADSR WCLKGASVVI
101: TATNFCPPNF ALPNNNGGWC NPPLKHFDMA QPAWEKIGIY RGGIVPVVFQ RVSCYKKGGV RFRINGRDYF ELVNIQNVGG AGSIKSVSIK GSKTGWLAMS
201: RNWGANWQSN AYLDGQALSF SITTTDGATR VFLNVVPSSW SFGQIYSSNV QF

Arabidopsis Description

EXPA11Expansin-A11 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.