Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- endoplasmic reticulum 4
- extracellular 3
- vacuole 3
- plasma membrane 4
- golgi 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH05100 | Soybean | cytosol, endoplasmic reticulum, nucleus | 12.79 | 49.25 |
| PGSC0003DMT400010943 | Potato | nucleus | 27.52 | 24.48 |
| GSMUA_Achr8P24990_001 | Banana | cytosol | 36.05 | 23.48 |
| PGSC0003DMT400081985 | Potato | cytosol, mitochondrion, nucleus | 30.62 | 19.51 |
| VIT_16s0098g01760.t01 | Wine grape | cytosol, mitochondrion, nucleus | 30.23 | 19.35 |
| Solyc01g006110.2.1 | Tomato | cytosol | 30.23 | 19.26 |
| CDX96173 | Canola | cytosol | 17.83 | 18.55 |
| AT5G53000.1 | Thale cress | cytosol | 28.29 | 18.02 |
| Bra003091.1-P | Field mustard | nucleus | 27.91 | 17.78 |
| CDY19650 | Canola | cytosol | 27.52 | 17.53 |
| CDY50498 | Canola | cytosol | 24.03 | 15.7 |
| GSMUA_Achr4P09110_001 | Banana | cytosol, golgi | 2.33 | 4.26 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P09120_001 | EnsemblPlants:GSMUA_Achr4T09120_001 | EnsemblPlantsGene:GSMUA_Achr4G09120_001 | SEG:seg | UniParc:UPI0002967F22 | UniProt:M0SMC9 |
| MapMan:35.1 | : | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G09120_001]
Coordinates
chr4:+:6628429..6636368
Molecular Weight (calculated)
29636.8 Da
IEP (calculated)
8.017
GRAVY (calculated)
-0.111
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPRVLNGFL SISYVYIFRH DSRLFLYLWI FLELPYFQAF DLLYMLKKEE EMLIAAKEKQ SKGGEDFARE ILDERTKQAE TWHRDAASQA AFSKPAEPIT
101: CATFAQDVIE GRVKLSQARA QAPTTGIWSL IGGRLTSERK NDSPSLPTRS YAISRCFLRT TSWLEPPMCI AFLSIQRNRS SFMDCSFEDL YLVPCLCTHQ
201: SHIFCLVILA SMVVSSRPLS TNHHGSTCLL QINRWPQSSP LPEIYVHHFN SHFGLKEM
101: CATFAQDVIE GRVKLSQARA QAPTTGIWSL IGGRLTSERK NDSPSLPTRS YAISRCFLRT TSWLEPPMCI AFLSIQRNRS SFMDCSFEDL YLVPCLCTHQ
201: SHIFCLVILA SMVVSSRPLS TNHHGSTCLL QINRWPQSSP LPEIYVHHFN SHFGLKEM
001: MGGLAMEEMP LSVLFEQARK IHLAASESGV DQDVVKKGCE MFQKCEDMIG KLALFSSNET KEDISTNNLK YLLVPYYLAE LTEKIIQEDR IQIVKASYAK
101: LKEFFSFCEA MELVPDEELE ASSRGGSGAP ADRRALKIAR FKRQKAAEAK LLEIKERKER RGRSTKASAL STPVESGEDD IPDDDSEEER EAWLSSINLA
201: ICKAIDLLEM LKREEEMLSA IKERQLKDGE GGFSRDALDD RTKKAETWHR DAAARIQYSK PAQPITCATF AQDVLEGRAS VSQGHEHKNQ PLIFGPASIV
301: GGPLSTERER MIAQVFQPSH RMPTMCIEDA GLTEMNIMND WQEQTKKAIE EATTSWYNDK PLRRKEEDEE DDDEDEEAVM KARAFDDWKD DNPRGAGNKK
401: LTPCG
101: LKEFFSFCEA MELVPDEELE ASSRGGSGAP ADRRALKIAR FKRQKAAEAK LLEIKERKER RGRSTKASAL STPVESGEDD IPDDDSEEER EAWLSSINLA
201: ICKAIDLLEM LKREEEMLSA IKERQLKDGE GGFSRDALDD RTKKAETWHR DAAARIQYSK PAQPITCATF AQDVLEGRAS VSQGHEHKNQ PLIFGPASIV
301: GGPLSTERER MIAQVFQPSH RMPTMCIEDA GLTEMNIMND WQEQTKKAIE EATTSWYNDK PLRRKEEDEE DDDEDEEAVM KARAFDDWKD DNPRGAGNKK
401: LTPCG
Arabidopsis Description
TAP46PP2A regulatory subunit TAP46 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDQ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.