Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19650 | Canola | cytosol | 91.36 | 91.36 |
| CDY50498 | Canola | cytosol | 88.89 | 91.14 |
| Bra003091.1-P | Field mustard | nucleus | 91.11 | 91.11 |
| CDX96173 | Canola | cytosol | 49.88 | 81.45 |
| VIT_16s0098g01760.t01 | Wine grape | cytosol, mitochondrion, nucleus | 73.33 | 73.7 |
| KRH64428 | Soybean | cytosol, mitochondrion, nucleus | 70.12 | 71.36 |
| Solyc01g006110.2.1 | Tomato | cytosol | 71.11 | 71.11 |
| PGSC0003DMT400010943 | Potato | nucleus | 50.86 | 71.03 |
| PGSC0003DMT400081985 | Potato | cytosol, mitochondrion, nucleus | 70.62 | 70.62 |
| KRH53508 | Soybean | endoplasmic reticulum, golgi, plastid | 69.63 | 66.67 |
| KRH75240 | Soybean | cytosol | 12.84 | 64.2 |
| EES07947 | Sorghum | cytosol | 62.47 | 60.67 |
| TraesCS5D01G142100.1 | Wheat | nucleus | 61.48 | 60.14 |
| TraesCS5A01G135500.1 | Wheat | nucleus | 61.48 | 60.14 |
| TraesCS5B01G134400.1 | Wheat | nucleus | 61.23 | 59.9 |
| Os12t0137500-01 | Rice | cytosol | 61.73 | 59.81 |
| KRH05100 | Soybean | cytosol, endoplasmic reticulum, nucleus | 9.88 | 59.7 |
| Zm00001d052462_P001 | Maize | cytosol, mitochondrion, nucleus | 61.98 | 59.34 |
| Os11t0141000-02 | Rice | cytosol | 60.99 | 59.09 |
| HORVU5Hr1G043520.1 | Barley | nucleus | 60.25 | 58.94 |
| Zm00001d004976_P002 | Maize | cytosol, mitochondrion, nucleus | 61.73 | 58.41 |
| OQU87588 | Sorghum | cytosol | 16.3 | 51.16 |
| OQU89556 | Sorghum | mitochondrion | 16.05 | 47.1 |
| KXG25489 | Sorghum | cytosol, mitochondrion | 23.46 | 40.77 |
| GSMUA_Achr4P09120_001 | Banana | endoplasmic reticulum, plasma membrane | 18.02 | 28.29 |
Protein Annotations
| Gene3D:1.25.40.540 | MapMan:35.1 | EntrezGene:835379 | ProteinID:AED96288.1 | EMBL:AF133708 | ArrayExpress:AT5G53000 |
| EnsemblPlantsGene:AT5G53000 | RefSeq:AT5G53000 | TAIR:AT5G53000 | RefSeq:AT5G53000-TAIR-G | EnsemblPlants:AT5G53000.1 | TAIR:AT5G53000.1 |
| EMBL:AY085863 | ProteinID:BAA97140.1 | EMBL:BT004072 | EMBL:BT006150 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0006464 | GO:GO:0006808 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009409 | GO:GO:0009628 | GO:GO:0009719 |
| GO:GO:0009737 | GO:GO:0009791 | GO:GO:0009966 | GO:GO:0009987 | GO:GO:0010187 | GO:GO:0016043 |
| GO:GO:0016049 | GO:GO:0019538 | GO:GO:0019888 | GO:GO:0019900 | GO:GO:0019903 | GO:GO:0030234 |
| GO:GO:0030307 | GO:GO:0031929 | GO:GO:0032008 | GO:GO:0035303 | GO:GO:0040007 | GO:GO:0043666 |
| GO:GO:0050790 | GO:GO:0051721 | InterPro:IPR038511 | RefSeq:NP_568783.1 | PFAM:PF04177 | PO:PO:0000003 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR10933 | PANTHER:PTHR10933:SF9 | UniProt:Q8LDQ4 | InterPro:TAP42/TAP46-like_sf |
| Symbol:TAP46 | InterPro:TAP46-like | UniParc:UPI000000C264 | SEG:seg | : | : |
Description
TAP46PP2A regulatory subunit TAP46 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDQ4]
Coordinates
chr5:-:21485317..21488042
Molecular Weight (calculated)
45665.9 Da
IEP (calculated)
4.639
GRAVY (calculated)
-0.723
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGLAMEEMP LSVLFEQARK IHLAASESGV DQDVVKKGCE MFQKCEDMIG KLALFSSNET KEDISTNNLK YLLVPYYLAE LTEKIIQEDR IQIVKASYAK
101: LKEFFSFCEA MELVPDEELE ASSRGGSGAP ADRRALKIAR FKRQKAAEAK LLEIKERKER RGRSTKASAL STPVESGEDD IPDDDSEEER EAWLSSINLA
201: ICKAIDLLEM LKREEEMLSA IKERQLKDGE GGFSRDALDD RTKKAETWHR DAAARIQYSK PAQPITCATF AQDVLEGRAS VSQGHEHKNQ PLIFGPASIV
301: GGPLSTERER MIAQVFQPSH RMPTMCIEDA GLTEMNIMND WQEQTKKAIE EATTSWYNDK PLRRKEEDEE DDDEDEEAVM KARAFDDWKD DNPRGAGNKK
401: LTPCG
101: LKEFFSFCEA MELVPDEELE ASSRGGSGAP ADRRALKIAR FKRQKAAEAK LLEIKERKER RGRSTKASAL STPVESGEDD IPDDDSEEER EAWLSSINLA
201: ICKAIDLLEM LKREEEMLSA IKERQLKDGE GGFSRDALDD RTKKAETWHR DAAARIQYSK PAQPITCATF AQDVLEGRAS VSQGHEHKNQ PLIFGPASIV
301: GGPLSTERER MIAQVFQPSH RMPTMCIEDA GLTEMNIMND WQEQTKKAIE EATTSWYNDK PLRRKEEDEE DDDEDEEAVM KARAFDDWKD DNPRGAGNKK
401: LTPCG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.