Factsheet for VIT_16s0098g01760.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010943	Potato	nucleus	58.56	81.38
KRH64428	Soybean	cytosol, mitochondrion, nucleus	77.67	78.64
Solyc01g006110.2.1	Tomato	cytosol	78.16	77.78
PGSC0003DMT400081985	Potato	cytosol, mitochondrion, nucleus	76.92	76.54
Bra003091.1-P	Field mustard	nucleus	74.19	73.83
CDY50498	Canola	cytosol	71.96	73.42
AT5G53000.1	Thale cress	cytosol	73.7	73.33
CDY19650	Canola	cytosol	73.7	73.33
KRH53508	Soybean	endoplasmic reticulum, golgi, plastid	75.19	71.63
Os12t0137500-01	Rice	cytosol	67.99	65.55
Os11t0141000-02	Rice	cytosol	67.74	65.31
EES07947	Sorghum	cytosol	66.75	64.51
Zm00001d052462_P001	Maize	cytosol, mitochondrion, nucleus	66.25	63.12
TraesCS5A01G135500.1	Wheat	nucleus	64.76	63.04
TraesCS5D01G142100.1	Wheat	nucleus	64.76	63.04
KRH75240	Soybean	cytosol	12.66	62.96
TraesCS5B01G134400.1	Wheat	nucleus	64.52	62.8
KRH05100	Soybean	cytosol, endoplasmic reticulum, nucleus	10.42	62.69
HORVU5Hr1G043520.1	Barley	nucleus	64.27	62.56
CDX96173	Canola	cytosol	38.46	62.5
Zm00001d004976_P002	Maize	cytosol, mitochondrion, nucleus	65.51	61.68
OQU87588	Sorghum	cytosol	17.12	53.49
OQU89556	Sorghum	mitochondrion	16.63	48.55
KXG25489	Sorghum	cytosol, mitochondrion	26.05	45.06
GSMUA_Achr4P09120_001	Banana	endoplasmic reticulum, plasma membrane	19.35	30.23

Protein Annotations

Gene3D:1.25.40.540	EntrezGene:100267623	wikigene:100267623	MapMan:35.1	ProteinID:CBI23016	ProteinID:CBI23016.3
UniProt:E0CV55	EMBL:FN595247	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009966	GO:GO:0009987	GO:GO:0019538
GO:GO:0019888	GO:GO:0030234	GO:GO:0035303	GO:GO:0043666	GO:GO:0050790	GO:GO:0051721
InterPro:IPR038511	EntrezGene:LOC100267623	wikigene:LOC100267623	PFAM:PF04177	PANTHER:PTHR10933	PANTHER:PTHR10933:SF9
InterPro:TAP42/TAP46-like_sf	InterPro:TAP46-like	TIGR:TC65272	UniParc:UPI00015CB9C9	ArrayExpress:VIT_16s0098g01760	EnsemblPlantsGene:VIT_16s0098g01760
EnsemblPlants:VIT_16s0098g01760.t01	unigene:Vvi.16327	RefSeq:XP_002277330	RefSeq:XP_002277330.1	SEG:seg	:

Description

No Description!

Coordinates

chr16:+:21836491..21842611

Molecular Weight (calculated)

45608.7 Da

IEP (calculated)

4.794

GRAVY (calculated)

-0.794

Length

403 amino acids

Sequence
(BLAST)

001: MGEYKMEEMS LLALFEQARK IHLAASESGA DQDAVRKGCE ALEKCEEMVS KLGLFSSNET KDDISTSNLK YLLVPFYLAE LTEKIAQDDR IQILKVSQAK
101: LKEFISFCEA MELVPEEELE TSTQGGPNSF ADRRAKKIAR FKRQRAAESK LLEIKERKER RGRSTKASAL STPVDTGDED VLDDDGEEER EAWLTTISLA
201: LCKAFDLLEM LKKEEEMLSA IKEKQLQEGD KEVSRAILDE RAKRTEDWHR DAAARAQYTK PAPPITCATF AQDVLEGRAT VSQVHEHKHQ PMIFGPASLV
301: GGRLTNEREI MAAQVFQPSH RLPTMSIEEA GLREMEMMNK WQERNAKLIE EANSSWHKES RKPGPSEEDD EDDDAAQEKA RAWDDWKDDN PRGAGNKKLT
401: PCG

Best Arabidopsis Sequence Match ( AT5G53000.1 )
(BLAST)

001: MGGLAMEEMP LSVLFEQARK IHLAASESGV DQDVVKKGCE MFQKCEDMIG KLALFSSNET KEDISTNNLK YLLVPYYLAE LTEKIIQEDR IQIVKASYAK
101: LKEFFSFCEA MELVPDEELE ASSRGGSGAP ADRRALKIAR FKRQKAAEAK LLEIKERKER RGRSTKASAL STPVESGEDD IPDDDSEEER EAWLSSINLA
201: ICKAIDLLEM LKREEEMLSA IKERQLKDGE GGFSRDALDD RTKKAETWHR DAAARIQYSK PAQPITCATF AQDVLEGRAS VSQGHEHKNQ PLIFGPASIV
301: GGPLSTERER MIAQVFQPSH RMPTMCIEDA GLTEMNIMND WQEQTKKAIE EATTSWYNDK PLRRKEEDEE DDDEDEEAVM KARAFDDWKD DNPRGAGNKK
401: LTPCG

Arabidopsis Description

TAP46PP2A regulatory subunit TAP46 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDQ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.