CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50498	Canola	cytosol	95.56	97.97
AT5G53000.1	Thale cress	cytosol	91.36	91.36
CDX96173	Canola	cytosol	50.37	82.26
VIT_16s0098g01760.t01	Wine grape	cytosol, mitochondrion, nucleus	73.33	73.7
KRH64428	Soybean	cytosol, mitochondrion, nucleus	71.11	72.36
Solyc01g006110.2.1	Tomato	cytosol	70.37	70.37
PGSC0003DMT400010943	Potato	nucleus	50.37	70.34
PGSC0003DMT400081985	Potato	cytosol, mitochondrion, nucleus	69.63	69.63
KRH53508	Soybean	endoplasmic reticulum, golgi, plastid	71.11	68.09
KRH75240	Soybean	cytosol	13.58	67.9
EES07947	Sorghum	cytosol	64.69	62.83
Os12t0137500-01	Rice	cytosol	63.95	61.96
TraesCS5D01G142100.1	Wheat	nucleus	63.21	61.84
TraesCS5A01G135500.1	Wheat	nucleus	63.21	61.84
TraesCS5B01G134400.1	Wheat	nucleus	62.96	61.59
Os11t0141000-02	Rice	cytosol	63.21	61.24
Zm00001d052462_P001	Maize	cytosol, mitochondrion, nucleus	63.95	61.23
HORVU5Hr1G043520.1	Barley	nucleus	61.98	60.63
Zm00001d004976_P002	Maize	cytosol, mitochondrion, nucleus	63.95	60.51
KRH05100	Soybean	cytosol, endoplasmic reticulum, nucleus	9.14	55.22
OQU87588	Sorghum	cytosol	16.79	52.71
OQU89556	Sorghum	mitochondrion	16.3	47.83
KXG25489	Sorghum	cytosol, mitochondrion	24.69	42.92
GSMUA_Achr4P09120_001	Banana	endoplasmic reticulum, plasma membrane	17.53	27.52

Protein Annotations

EnsemblPlants:CDY19650	EnsemblPlantsGene:GSBRNA2T00009345001	Gene3D:1.25.40.540	GO:A0A078FZ79	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009966	GO:GO:0009987	InterPro:IPR038511	InterPro:TAP42/TAP46-like_sf	InterPro:TAP46-like
ncoils:Coil	PANTHER:PTHR10933	PANTHER:PTHR10933:SF9	PFAM:PF04177	ProteinID:CDY19650	ProteinID:CDY19650.1
SEG:seg	UniParc:UPI0004EF0941	UniProt:A0A078FZ79	MapMan:35.1	:	:

Description

BnaC09g29060DBnaC09g29060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZ79]

Coordinates

chrLK032099:-:256553..258866

Molecular Weight (calculated)

45950.2 Da

IEP (calculated)

4.764

GRAVY (calculated)

-0.776

Length

405 amino acids

Sequence
(BLAST)

001: MGGLAMEEMP LSALFEEARK IHLGASESRA DQDVVKKGCE MLQKCEDMVG KLGLFSSNET KEDISTNNLK YLLVPFYLAE LTEKIKQEDR IPIVKASYAK
101: LKEFFSFCEA MELVPEEELE ASSRGGSAPP ADRRALKIAR FKRQKAAEAK LLEIKERKER RWRSKRAAAL STPVESGEED IPDDDSEEER DAWLATINLA
201: ICKAIDLLEM LKREEEMLSA IKEKQLKDGE DVFSRDALDD RTKKAETWHK DAAARVQYSR PAQPITCATF AQDVLEGRAS VSQGHEHKHQ PLIFGPASIV
301: NGSLSTERER MIAQVFQPSH RMPTMSIEDA GLTEMNIMND WQEQTKKAIE EATTSWHNDR PLRRKEEDEE DEDEDEEAVM KARAFDDWKD DNPRGAGNKK
401: LTPCG

Best Arabidopsis Sequence Match ( AT5G53000.1 )
(BLAST)

001: MGGLAMEEMP LSVLFEQARK IHLAASESGV DQDVVKKGCE MFQKCEDMIG KLALFSSNET KEDISTNNLK YLLVPYYLAE LTEKIIQEDR IQIVKASYAK
101: LKEFFSFCEA MELVPDEELE ASSRGGSGAP ADRRALKIAR FKRQKAAEAK LLEIKERKER RGRSTKASAL STPVESGEDD IPDDDSEEER EAWLSSINLA
201: ICKAIDLLEM LKREEEMLSA IKERQLKDGE GGFSRDALDD RTKKAETWHR DAAARIQYSK PAQPITCATF AQDVLEGRAS VSQGHEHKNQ PLIFGPASIV
301: GGPLSTERER MIAQVFQPSH RMPTMCIEDA GLTEMNIMND WQEQTKKAIE EATTSWYNDK PLRRKEEDEE DDDEDEEAVM KARAFDDWKD DNPRGAGNKK
401: LTPCG

Arabidopsis Description

TAP46PP2A regulatory subunit TAP46 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDQ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.