Factsheet for Zm00001d052462_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07947	Sorghum	cytosol	92.44	93.77
Zm00001d004976_P002	Maize	cytosol, mitochondrion, nucleus	90.31	89.25
Os12t0137500-01	Rice	cytosol	85.82	86.84
Os11t0141000-02	Rice	cytosol	84.63	85.65
TraesCS5A01G135500.1	Wheat	nucleus	81.09	82.85
TraesCS5B01G134400.1	Wheat	nucleus	80.85	82.61
TraesCS5D01G142100.1	Wheat	nucleus	80.61	82.37
HORVU5Hr1G043520.1	Barley	nucleus	79.91	81.64
GSMUA_Achr8P24990_001	Banana	cytosol	68.32	72.98
PGSC0003DMT400010943	Potato	nucleus	46.57	67.93
VIT_16s0098g01760.t01	Wine grape	cytosol, mitochondrion, nucleus	63.12	66.25
KRH64428	Soybean	cytosol, mitochondrion, nucleus	62.17	66.08
Solyc01g006110.2.1	Tomato	cytosol	62.88	65.68
PGSC0003DMT400081985	Potato	cytosol, mitochondrion, nucleus	62.65	65.43
CDY19650	Canola	cytosol	61.23	63.95
Bra003091.1-P	Field mustard	nucleus	60.99	63.7
KRH53508	Soybean	endoplasmic reticulum, golgi, plastid	63.36	63.36
CDY50498	Canola	cytosol	59.1	63.29
AT5G53000.1	Thale cress	cytosol	59.34	61.98
KRH05100	Soybean	cytosol, endoplasmic reticulum, nucleus	9.46	59.7
CDX96173	Canola	cytosol	33.33	56.85
KRH75240	Soybean	cytosol	9.69	50.62
GSMUA_Achr4P09110_001	Banana	cytosol, golgi	16.08	48.23

Protein Annotations

EMBL:BT039361	EnsemblPlants:Zm00001d052462_P001	EnsemblPlants:Zm00001d052462_T001	EnsemblPlantsGene:Zm00001d052462	EntrezGene:100282177	Gene3D:1.25.40.540
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009966	GO:GO:0009987	InterPro:IPR038511
InterPro:TAP42/TAP46-like_sf	InterPro:TAP46-like	PANTHER:PTHR10933	PANTHER:PTHR10933:SF9	PFAM:PF04177	ProteinID:AQK57288.1
SEG:seg	UniParc:UPI00017B8055	UniProt:B4FQH3	MapMan:35.1	:	:

Description

PP2A regulatory subunit TAP46

Coordinates

chr4:+:190492832..190496934

Molecular Weight (calculated)

47475.1 Da

IEP (calculated)

4.972

GRAVY (calculated)

-0.720

Length

423 amino acids

Sequence
(BLAST)

001: MVDVEEVGNK MQSQMRLHAE PDDAAADLPL PALFDRASRL HALASSSALD QDGIRTGVEL LRRCDEMVGR LGLFSPNETK DDVSTANLKY LLVPYYLAEM
101: TEKMAQEDRI PVLKASQDHL KEFIALCEVL ELIPEDELEL SRQKQSDTMA NRRAQKVARF KRQKAAETKL QEIRERKERR GRSLRATALS APVEAGEEDD
201: LEDDGEEERE AWLATISLAI CKAFDLLDML KKEEEMLLAV KERKAKDGNA FAREMLDERT KKAEAWHHKA ASRVAYSKPA DPITCATFAQ DVIEGRASVS
301: QAHEHKHQPL IFGPASLVGG GLTSERERMA AQVFQPSYRM PTMSIEEAGL REMKMMERWQ ERTAEMMREA NSAWHKGGDS SSSSMPQGEG GDEDAEEAKA
401: RAWDDWKDDN PRGAGNKKLT PCG

Best Arabidopsis Sequence Match ( AT5G53000.1 )
(BLAST)

001: MGGLAMEEMP LSVLFEQARK IHLAASESGV DQDVVKKGCE MFQKCEDMIG KLALFSSNET KEDISTNNLK YLLVPYYLAE LTEKIIQEDR IQIVKASYAK
101: LKEFFSFCEA MELVPDEELE ASSRGGSGAP ADRRALKIAR FKRQKAAEAK LLEIKERKER RGRSTKASAL STPVESGEDD IPDDDSEEER EAWLSSINLA
201: ICKAIDLLEM LKREEEMLSA IKERQLKDGE GGFSRDALDD RTKKAETWHR DAAARIQYSK PAQPITCATF AQDVLEGRAS VSQGHEHKNQ PLIFGPASIV
301: GGPLSTERER MIAQVFQPSH RMPTMCIEDA GLTEMNIMND WQEQTKKAIE EATTSWYNDK PLRRKEEDEE DDDEDEEAVM KARAFDDWKD DNPRGAGNKK
401: LTPCG

Arabidopsis Description

TAP46PP2A regulatory subunit TAP46 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDQ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.