CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53508	Soybean	endoplasmic reticulum, golgi, plastid	93.72	88.18
KRH75240	Soybean	cytosol	17.34	85.19
KRH05100	Soybean	cytosol, endoplasmic reticulum, nucleus	14.32	85.07
VIT_16s0098g01760.t01	Wine grape	cytosol, mitochondrion, nucleus	78.64	77.67
PGSC0003DMT400010943	Potato	nucleus	54.27	74.48
Solyc01g006110.2.1	Tomato	cytosol	73.87	72.59
PGSC0003DMT400081985	Potato	cytosol, mitochondrion, nucleus	72.86	71.6
CDY19650	Canola	cytosol	72.36	71.11
Bra003091.1-P	Field mustard	nucleus	72.36	71.11
CDY50498	Canola	cytosol	70.1	70.63
AT5G53000.1	Thale cress	cytosol	71.36	70.12
EES07947	Sorghum	cytosol	67.59	64.51
Os12t0137500-01	Rice	cytosol	66.58	63.4
TraesCS5D01G142100.1	Wheat	nucleus	65.58	63.04
TraesCS5A01G135500.1	Wheat	nucleus	65.58	63.04
TraesCS5B01G134400.1	Wheat	nucleus	65.33	62.8
Os11t0141000-02	Rice	cytosol	65.83	62.68
Zm00001d052462_P001	Maize	cytosol, mitochondrion, nucleus	66.08	62.17
HORVU5Hr1G043520.1	Barley	nucleus	64.57	62.08
CDX96173	Canola	cytosol	38.44	61.69
Zm00001d004976_P002	Maize	cytosol, mitochondrion, nucleus	66.33	61.68
OQU87588	Sorghum	cytosol	18.09	55.81
OQU89556	Sorghum	mitochondrion	17.59	50.72
KXG25489	Sorghum	cytosol, mitochondrion	25.38	43.35

Protein Annotations

Gene3D:1.25.40.540	EntrezGene:100807894	MapMan:35.1	EMBL:ACUP02002765	EnsemblPlantsGene:GLYMA_04G234900	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009966	GO:GO:0009987	GO:GO:0019538	GO:GO:0019888	GO:GO:0030234	GO:GO:0035303
GO:GO:0043666	GO:GO:0050790	GO:GO:0051721	UniProt:I1JYQ8	InterPro:IPR038511	EnsemblPlants:KRH64428
ProteinID:KRH64428	ProteinID:KRH64428.1	PFAM:PF04177	PANTHER:PTHR10933	PANTHER:PTHR10933:SF9	InterPro:TAP42/TAP46-like_sf
InterPro:TAP46-like	UniParc:UPI0002339F1A	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:50331710..50335924

Molecular Weight (calculated)

45136.1 Da

IEP (calculated)

4.867

GRAVY (calculated)

-0.839

Length

398 amino acids

Sequence
(BLAST)

001: MDDMPLPALF EQARKIHAAA TDSGADQEVV KKGCEALHRC EDMVNNLGLF SPNETKEDIS TTNLKYILVP FYLAELTEKI AQDDRIQILK SSQAKLKEFI
101: SFCEAMELVP KEELESYIDG APKTVADQRA RKIARFKRQR AAESKLLEIK ERKERRGRST KAAALSTPVE AGEEEVLDDD GEEEREAWIT TISLAICKAL
201: DMLDMLKKEE EMLSAVKDRQ SKDGDKEFSK DVLDERAKKA EAWHRDSAVR AQYTRPSPPI TCATFAQDVL EGRAKASQEH DHKHQPLIFG PASLVNGNIT
301: TERERMAAQV FQPSHRMPTM SIEEAGLKEM EIMNKWQERN VKLMEEVNSS WHNDRKSKLG EDDDDEDDDA AQEKARAWDD WKDDNPRGAG NKKLTPCG

Best Arabidopsis Sequence Match ( AT5G53000.1 )
(BLAST)

001: MGGLAMEEMP LSVLFEQARK IHLAASESGV DQDVVKKGCE MFQKCEDMIG KLALFSSNET KEDISTNNLK YLLVPYYLAE LTEKIIQEDR IQIVKASYAK
101: LKEFFSFCEA MELVPDEELE ASSRGGSGAP ADRRALKIAR FKRQKAAEAK LLEIKERKER RGRSTKASAL STPVESGEDD IPDDDSEEER EAWLSSINLA
201: ICKAIDLLEM LKREEEMLSA IKERQLKDGE GGFSRDALDD RTKKAETWHR DAAARIQYSK PAQPITCATF AQDVLEGRAS VSQGHEHKNQ PLIFGPASIV
301: GGPLSTERER MIAQVFQPSH RMPTMCIEDA GLTEMNIMND WQEQTKKAIE EATTSWYNDK PLRRKEEDEE DDDEDEEAVM KARAFDDWKD DNPRGAGNKK
401: LTPCG

Arabidopsis Description

TAP46PP2A regulatory subunit TAP46 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDQ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.