CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU89556	Sorghum	mitochondrion	92.25	86.23
KXG25489	Sorghum	cytosol, mitochondrion	86.05	47.64
KRH05100	Soybean	cytosol, endoplasmic reticulum, nucleus	14.73	28.36
PGSC0003DMT400010943	Potato	nucleus	50.39	22.41
EES07947	Sorghum	cytosol	70.54	21.82
TraesCS5A01G135500.1	Wheat	nucleus	67.44	21.01
TraesCS5B01G134400.1	Wheat	nucleus	67.44	21.01
TraesCS5D01G142100.1	Wheat	nucleus	67.44	21.01
Os11t0141000-02	Rice	cytosol	66.67	20.57
Os12t0137500-01	Rice	cytosol	66.67	20.57
HORVU5Hr1G043520.1	Barley	nucleus	64.34	20.05
GSMUA_Achr8P24990_001	Banana	cytosol	57.36	18.69
KRH64428	Soybean	cytosol, mitochondrion, nucleus	55.81	18.09
CDX96173	Canola	cytosol	34.11	17.74
KRH53508	Soybean	endoplasmic reticulum, golgi, plastid	56.59	17.26
VIT_16s0098g01760.t01	Wine grape	cytosol, mitochondrion, nucleus	53.49	17.12
CDY50498	Canola	cytosol	51.94	16.96
CDY19650	Canola	cytosol	52.71	16.79
Bra003091.1-P	Field mustard	nucleus	51.94	16.54
Solyc01g006110.2.1	Tomato	cytosol	51.94	16.54
PGSC0003DMT400081985	Potato	cytosol, mitochondrion, nucleus	51.16	16.3
AT5G53000.1	Thale cress	cytosol	51.16	16.3
GSMUA_Achr4P09110_001	Banana	cytosol, golgi	15.5	14.18
KRH75240	Soybean	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:OQU87588	EnsemblPlantsGene:SORBI_3003G302701	Gene3D:1.25.40.540	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009966	GO:GO:0009987	InterPro:IPR038511	InterPro:TAP42/TAP46-like_sf	InterPro:TAP46-like	PANTHER:PTHR10933
PANTHER:PTHR10933:SF9	PFAM:PF04177	ProteinID:OQU87588	ProteinID:OQU87588.1	SEG:seg	UniParc:UPI0009DC892C
UniProt:A0A1W0VZM5	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:63332928..63335871

Molecular Weight (calculated)

14522.5 Da

IEP (calculated)

4.651

GRAVY (calculated)

-0.243

Length

129 amino acids

Sequence
(BLAST)

001: MMVARFKCQK AAETKLQEIR ESKERCGRSL RAAALSAPIE AGEEDDLEDD GEEEREAWLA TISLALCKAF DLLDMLKKEE EMLLAVKERK AKVWYDHLAV
101: VLPLRDATLE TSSGVNILFV LTSSARTYT

Best Arabidopsis Sequence Match ( AT5G53000.1 )
(BLAST)

001: MGGLAMEEMP LSVLFEQARK IHLAASESGV DQDVVKKGCE MFQKCEDMIG KLALFSSNET KEDISTNNLK YLLVPYYLAE LTEKIIQEDR IQIVKASYAK
101: LKEFFSFCEA MELVPDEELE ASSRGGSGAP ADRRALKIAR FKRQKAAEAK LLEIKERKER RGRSTKASAL STPVESGEDD IPDDDSEEER EAWLSSINLA
201: ICKAIDLLEM LKREEEMLSA IKERQLKDGE GGFSRDALDD RTKKAETWHR DAAARIQYSK PAQPITCATF AQDVLEGRAS VSQGHEHKNQ PLIFGPASIV
301: GGPLSTERER MIAQVFQPSH RMPTMCIEDA GLTEMNIMND WQEQTKKAIE EATTSWYNDK PLRRKEEDEE DDDEDEEAVM KARAFDDWKD DNPRGAGNKK
401: LTPCG

Arabidopsis Description

TAP46PP2A regulatory subunit TAP46 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDQ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.