CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU87588	Sorghum	cytosol	47.64	86.05
OQU89556	Sorghum	mitochondrion	45.49	76.81
KRH05100	Soybean	cytosol, endoplasmic reticulum, nucleus	10.3	35.82
EES07947	Sorghum	cytosol	60.09	33.57
GSMUA_Achr4P09110_001	Banana	cytosol, golgi	19.31	31.91
Os12t0137500-01	Rice	cytosol	56.22	31.34
Os11t0141000-02	Rice	cytosol	55.79	31.1
TraesCS5D01G142100.1	Wheat	nucleus	54.51	30.68
TraesCS5B01G134400.1	Wheat	nucleus	54.51	30.68
TraesCS5A01G135500.1	Wheat	nucleus	54.51	30.68
HORVU5Hr1G043520.1	Barley	nucleus	52.79	29.71
PGSC0003DMT400010943	Potato	nucleus	36.05	28.97
GSMUA_Achr8P24990_001	Banana	cytosol	47.21	27.78
VIT_16s0098g01760.t01	Wine grape	cytosol, mitochondrion, nucleus	45.06	26.05
CDY50498	Canola	cytosol	43.35	25.57
KRH64428	Soybean	cytosol, mitochondrion, nucleus	43.35	25.38
Solyc01g006110.2.1	Tomato	cytosol	42.92	24.69
Bra003091.1-P	Field mustard	nucleus	42.92	24.69
CDY19650	Canola	cytosol	42.92	24.69
PGSC0003DMT400081985	Potato	cytosol, mitochondrion, nucleus	42.49	24.44
KRH53508	Soybean	endoplasmic reticulum, golgi, plastid	43.35	23.88
AT5G53000.1	Thale cress	cytosol	40.77	23.46
CDX96173	Canola	cytosol	21.03	19.76
KRH75240	Soybean	cytosol	5.15	14.81

Protein Annotations

EnsemblPlants:KXG25489	EnsemblPlantsGene:SORBI_3007G186900	Gene3D:1.25.40.540	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009966	GO:GO:0009987	InterPro:IPR038511	InterPro:TAP42/TAP46-like_sf	InterPro:TAP46-like	PANTHER:PTHR10933
PANTHER:PTHR10933:SF9	PFAM:PF04177	ProteinID:KXG25489	ProteinID:KXG25489.1	SEG:seg	UniParc:UPI00081AD842
UniProt:A0A1B6PIH9	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:61978562..61984536

Molecular Weight (calculated)

26936.6 Da

IEP (calculated)

9.084

GRAVY (calculated)

-0.378

Length

233 amino acids

Sequence
(BLAST)

001: MRSVLSEKTS YRSWRGSSHL VISNNRSVLG ILFRQKTSFY KLILRTIINC DNIKEFIALC EVLELIPEDE LELSRQKQPD TMANRRAQKV ARFKRQKAAE
101: TKLQEIRERK ERRGRSLRAA ALSAPIEAGE EDDLEDDGEE EREAWLATIS LALCKAFDLL DMLKKEEEML LAVKERKAKV WYDHLAVVLP LRDATLETSS
201: GVNILFVLTS SARTYTYLHG KLFQWLLIKQ YTG

Best Arabidopsis Sequence Match ( AT5G53000.1 )
(BLAST)

001: MGGLAMEEMP LSVLFEQARK IHLAASESGV DQDVVKKGCE MFQKCEDMIG KLALFSSNET KEDISTNNLK YLLVPYYLAE LTEKIIQEDR IQIVKASYAK
101: LKEFFSFCEA MELVPDEELE ASSRGGSGAP ADRRALKIAR FKRQKAAEAK LLEIKERKER RGRSTKASAL STPVESGEDD IPDDDSEEER EAWLSSINLA
201: ICKAIDLLEM LKREEEMLSA IKERQLKDGE GGFSRDALDD RTKKAETWHR DAAARIQYSK PAQPITCATF AQDVLEGRAS VSQGHEHKNQ PLIFGPASIV
301: GGPLSTERER MIAQVFQPSH RMPTMCIEDA GLTEMNIMND WQEQTKKAIE EATTSWYNDK PLRRKEEDEE DDDEDEEAVM KARAFDDWKD DNPRGAGNKK
401: LTPCG

Arabidopsis Description

TAP46PP2A regulatory subunit TAP46 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDQ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.