Factsheet for PGSC0003DMT400010943

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96173	Canola	cytosol	51.38	60.08
PGSC0003DMT400081985	Potato	cytosol, mitochondrion, nucleus	83.1	59.51
VIT_16s0098g01760.t01	Wine grape	cytosol, mitochondrion, nucleus	81.38	58.56
KRH05100	Soybean	cytosol, endoplasmic reticulum, nucleus	12.76	55.22
KRH64428	Soybean	cytosol, mitochondrion, nucleus	74.48	54.27
AT5G53000.1	Thale cress	cytosol	71.03	50.86
KRH53508	Soybean	endoplasmic reticulum, golgi, plastid	73.79	50.59
OQU87588	Sorghum	cytosol	22.41	50.39
CDY19650	Canola	cytosol	70.34	50.37
Bra003091.1-P	Field mustard	nucleus	70.0	50.12
CDY50498	Canola	cytosol	67.24	49.37
Os12t0137500-01	Rice	cytosol	69.31	48.09
EES07947	Sorghum	cytosol	68.28	47.48
Os11t0141000-02	Rice	cytosol	68.28	47.37
TraesCS5D01G142100.1	Wheat	nucleus	67.24	47.1
TraesCS5B01G134400.1	Wheat	nucleus	67.24	47.1
TraesCS5A01G135500.1	Wheat	nucleus	67.24	47.1
Zm00001d052462_P001	Maize	cytosol, mitochondrion, nucleus	67.93	46.57
HORVU5Hr1G043520.1	Barley	nucleus	66.21	46.38
Zm00001d004976_P002	Maize	cytosol, mitochondrion, nucleus	67.59	45.79
OQU89556	Sorghum	mitochondrion	21.03	44.2
KXG25489	Sorghum	cytosol, mitochondrion	28.97	36.05
GSMUA_Achr4P09120_001	Banana	endoplasmic reticulum, plasma membrane	24.48	27.52
KRH75240	Soybean	cytosol	2.07	7.41

Protein Annotations

EnsemblPlants:PGSC0003DMT400010943	EnsemblPlantsGene:PGSC0003DMG400004286	Gene3D:1.25.40.540	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009966	GO:GO:0009987	InterPro:IPR038511	InterPro:TAP42/TAP46-like_sf	InterPro:TAP46-like	PANTHER:PTHR10933
PANTHER:PTHR10933:SF9	PFAM:PF04177	PGSC:PGSC0003DMG400004286	SEG:seg	UniParc:UPI0002961C0B	UniProt:M0ZYU0
MapMan:35.1	:	:	:	:	:

Description

Tap46 [Source:PGSC_GENE;Acc:PGSC0003DMG400004286]

Coordinates

chr12:+:61035075..61039166

Molecular Weight (calculated)

32932.7 Da

IEP (calculated)

5.746

GRAVY (calculated)

-0.950

Length

290 amino acids

Sequence
(BLAST)

001: MELVPEEEME TSKQGGANTF ADRRAKKIAR FKRQRAAESK LLELKERKER RGRSTKASAL STPVESGEDD VLDDDGDEER EAWLTTISFA LSKAFDLLEM
101: LNKEEEMLFA IKEKQLQDGK KEFSQLVLDE HTKKVETWHR DAAARAPYTK PAAPITCATF AQDVIEGRAN VSQAHEHKHK PLIFGPASLV GRNPTTEREK
201: IAAQVFQPHY RLPTMSIEEA GLTEMNMMNK WQERNVKLME EASSSWHRDA PKLRPGEEDD DAAQDKARAW DDWKDDNPRG AGNKKLTPCG

Best Arabidopsis Sequence Match ( AT5G53000.1 )
(BLAST)

001: MGGLAMEEMP LSVLFEQARK IHLAASESGV DQDVVKKGCE MFQKCEDMIG KLALFSSNET KEDISTNNLK YLLVPYYLAE LTEKIIQEDR IQIVKASYAK
101: LKEFFSFCEA MELVPDEELE ASSRGGSGAP ADRRALKIAR FKRQKAAEAK LLEIKERKER RGRSTKASAL STPVESGEDD IPDDDSEEER EAWLSSINLA
201: ICKAIDLLEM LKREEEMLSA IKERQLKDGE GGFSRDALDD RTKKAETWHR DAAARIQYSK PAQPITCATF AQDVLEGRAS VSQGHEHKNQ PLIFGPASIV
301: GGPLSTERER MIAQVFQPSH RMPTMCIEDA GLTEMNIMND WQEQTKKAIE EATTSWYNDK PLRRKEEDEE DDDEDEEAVM KARAFDDWKD DNPRGAGNKK
401: LTPCG

Arabidopsis Description

TAP46PP2A regulatory subunit TAP46 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDQ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.