Factsheet for PGSC0003DMT400081985

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g006110.2.1	Tomato	cytosol	98.02	98.02
PGSC0003DMT400010943	Potato	nucleus	59.51	83.1
VIT_16s0098g01760.t01	Wine grape	cytosol, mitochondrion, nucleus	76.54	76.92
KRH64428	Soybean	cytosol, mitochondrion, nucleus	71.6	72.86
AT5G53000.1	Thale cress	cytosol	70.62	70.62
Bra003091.1-P	Field mustard	nucleus	69.63	69.63
CDY19650	Canola	cytosol	69.63	69.63
CDY50498	Canola	cytosol	67.65	69.37
KRH53508	Soybean	endoplasmic reticulum, golgi, plastid	71.85	68.79
Os12t0137500-01	Rice	cytosol	66.42	64.35
Os11t0141000-02	Rice	cytosol	65.68	63.64
EES07947	Sorghum	cytosol	65.19	63.31
TraesCS5D01G142100.1	Wheat	nucleus	64.2	62.8
TraesCS5B01G134400.1	Wheat	nucleus	64.2	62.8
TraesCS5A01G135500.1	Wheat	nucleus	64.2	62.8
Zm00001d052462_P001	Maize	cytosol, mitochondrion, nucleus	65.43	62.65
HORVU5Hr1G043520.1	Barley	nucleus	63.46	62.08
CDX96173	Canola	cytosol	37.53	61.29
KRH05100	Soybean	cytosol, endoplasmic reticulum, nucleus	10.12	61.19
Zm00001d004976_P002	Maize	cytosol, mitochondrion, nucleus	64.44	60.98
KRH75240	Soybean	cytosol	11.85	59.26
OQU87588	Sorghum	cytosol	16.3	51.16
OQU89556	Sorghum	mitochondrion	16.05	47.1
KXG25489	Sorghum	cytosol, mitochondrion	24.44	42.49
GSMUA_Achr4P09120_001	Banana	endoplasmic reticulum, plasma membrane	19.51	30.62

Protein Annotations

EnsemblPlants:PGSC0003DMT400081985	EnsemblPlantsGene:PGSC0003DMG400032187	EntrezGene:102580983	Gene3D:1.25.40.540	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009966	GO:GO:0009987	InterPro:IPR038511	InterPro:TAP42/TAP46-like_sf	InterPro:TAP46-like
PANTHER:PTHR10933	PANTHER:PTHR10933:SF9	PFAM:PF04177	PGSC:PGSC0003DMG400032187	RefSeq:XP_006354168.1	SEG:seg
UniParc:UPI0002954325	UniProt:M1D5E6	MapMan:35.1	:	:	:

Description

Tap46 [Source:PGSC_GENE;Acc:PGSC0003DMG400032187]

Coordinates

chr1:-:1605710..1611808

Molecular Weight (calculated)

45894.9 Da

IEP (calculated)

4.633

GRAVY (calculated)

-0.771

Length

405 amino acids

Sequence
(BLAST)

001: MGELNMQEMP LPALFEHAKK IHDLASESSV DQGISRKGCE ILRVCEEMIG KLGLFSLNET KDDISTANLK YILVPYYLAE LTEKIAEDDR IEVLKASQAK
101: LKEFISFCET MELVPEDEIE TSTQGGSSSS VDRRAKKIAR FKRQRAAESK LLELKERRER RGRSTKAAAL SSPVETGEDD MFDDDGEEER EAWLTTISLA
201: LCKAFDLLEM LKKEEEILSA VREKQLQDGE KEFSQLILDE RTQKAESWHR DAATRARYTK PAAPITCATF AQDVIEGRAK VSQAHDHKHQ PLLFGPASLV
301: GMNPTTERQR IAAQVFQPHY SLPTMSIEEA GLTEMNMMNE WQERNVKLME EATSSWYNDG PKTRPNEDDE EDDNDDAAQE KARAWDDWKD DNPRGAGNKK
401: LTPCG

Best Arabidopsis Sequence Match ( AT5G53000.1 )
(BLAST)

001: MGGLAMEEMP LSVLFEQARK IHLAASESGV DQDVVKKGCE MFQKCEDMIG KLALFSSNET KEDISTNNLK YLLVPYYLAE LTEKIIQEDR IQIVKASYAK
101: LKEFFSFCEA MELVPDEELE ASSRGGSGAP ADRRALKIAR FKRQKAAEAK LLEIKERKER RGRSTKASAL STPVESGEDD IPDDDSEEER EAWLSSINLA
201: ICKAIDLLEM LKREEEMLSA IKERQLKDGE GGFSRDALDD RTKKAETWHR DAAARIQYSK PAQPITCATF AQDVLEGRAS VSQGHEHKNQ PLIFGPASIV
301: GGPLSTERER MIAQVFQPSH RMPTMCIEDA GLTEMNIMND WQEQTKKAIE EATTSWYNDK PLRRKEEDEE DDDEDEEAVM KARAFDDWKD DNPRGAGNKK
401: LTPCG

Arabidopsis Description

TAP46PP2A regulatory subunit TAP46 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDQ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.