CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003091.1-P	Field mustard	nucleus	99.24	96.79
CDY19650	Canola	cytosol	97.97	95.56
AT5G53000.1	Thale cress	cytosol	91.14	88.89
CDX96173	Canola	cytosol	52.41	83.47
VIT_16s0098g01760.t01	Wine grape	cytosol, mitochondrion, nucleus	73.42	71.96
KRH64428	Soybean	cytosol, mitochondrion, nucleus	70.63	70.1
Solyc01g006110.2.1	Tomato	cytosol	70.13	68.4
PGSC0003DMT400081985	Potato	cytosol, mitochondrion, nucleus	69.37	67.65
PGSC0003DMT400010943	Potato	nucleus	49.37	67.24
KRH53508	Soybean	endoplasmic reticulum, golgi, plastid	70.13	65.48
KRH75240	Soybean	cytosol	13.42	65.43
EES07947	Sorghum	cytosol	64.3	60.91
TraesCS5A01G135500.1	Wheat	nucleus	62.78	59.9
TraesCS5D01G142100.1	Wheat	nucleus	62.78	59.9
Os12t0137500-01	Rice	cytosol	63.29	59.81
TraesCS5B01G134400.1	Wheat	nucleus	62.53	59.66
Zm00001d052462_P001	Maize	cytosol, mitochondrion, nucleus	63.29	59.1
Os11t0141000-02	Rice	cytosol	62.53	59.09
HORVU5Hr1G043520.1	Barley	nucleus	61.52	58.7
Zm00001d004976_P002	Maize	cytosol, mitochondrion, nucleus	63.54	58.64
KRH05100	Soybean	cytosol, endoplasmic reticulum, nucleus	9.62	56.72
OQU87588	Sorghum	cytosol	16.96	51.94
OQU89556	Sorghum	mitochondrion	16.46	47.1
KXG25489	Sorghum	cytosol, mitochondrion	25.57	43.35
GSMUA_Achr4P09120_001	Banana	endoplasmic reticulum, plasma membrane	15.7	24.03

Protein Annotations

EnsemblPlants:CDY50498	EnsemblPlantsGene:GSBRNA2T00096892001	Gene3D:1.25.40.540	GO:A0A078IN84	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009966	GO:GO:0009987	InterPro:IPR038511	InterPro:TAP42/TAP46-like_sf	InterPro:TAP46-like
ncoils:Coil	PANTHER:PTHR10933	PANTHER:PTHR10933:SF9	PFAM:PF04177	ProteinID:CDY50498	ProteinID:CDY50498.1
SEG:seg	UniParc:UPI0004EE198F	UniProt:A0A078IN84	MapMan:35.1	:	:

Description

BnaA10g06390DBnaA10g06390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IN84]

Coordinates

chrLK032917:-:96870..99289

Molecular Weight (calculated)

44855.9 Da

IEP (calculated)

4.872

GRAVY (calculated)

-0.793

Length

395 amino acids

Sequence
(BLAST)

001: MGGVAMEEMP LSALFEEARK IHLAASESRA DQDVVRKGCA MLQKCEDMVG KLGLFSSNET KEDISTNNLK YLLVPFYLAE LTEKIKQEDR IPIVKASYAK
101: LKEFFSFCEA MELVPEEELE ASSRGGSAPP ADRRALKIAR FKRQKAAEAK LLEIKERKER RGRSKRAAAL STPVESGEED IPDDDSEEER DAWLATINLA
201: ICKAIDLLEM LKREEEMLSA IKEKQLKDGE DVFSRDALDD RTKKAETWHR DAAARVQYSR PAQPITWRAS VSQGHEHKHQ PLIFGPASIV NGSLSTERER
301: MIAQVFQPSH RMPTMSIEDA GLTEMNIMND WQEQTKKAIE EATTSWHNDR PLRRKEEDEE DDDEDEEAVM KARAFDDWKD DNPRGAGNKK LTPCG

Best Arabidopsis Sequence Match ( AT5G53000.1 )
(BLAST)

001: MGGLAMEEMP LSVLFEQARK IHLAASESGV DQDVVKKGCE MFQKCEDMIG KLALFSSNET KEDISTNNLK YLLVPYYLAE LTEKIIQEDR IQIVKASYAK
101: LKEFFSFCEA MELVPDEELE ASSRGGSGAP ADRRALKIAR FKRQKAAEAK LLEIKERKER RGRSTKASAL STPVESGEDD IPDDDSEEER EAWLSSINLA
201: ICKAIDLLEM LKREEEMLSA IKERQLKDGE GGFSRDALDD RTKKAETWHR DAAARIQYSK PAQPITCATF AQDVLEGRAS VSQGHEHKNQ PLIFGPASIV
301: GGPLSTERER MIAQVFQPSH RMPTMCIEDA GLTEMNIMND WQEQTKKAIE EATTSWYNDK PLRRKEEDEE DDDEDEEAVM KARAFDDWKD DNPRGAGNKK
401: LTPCG

Arabidopsis Description

TAP46PP2A regulatory subunit TAP46 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDQ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.