Factsheet for Solyc01g006110.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081985	Potato	cytosol, mitochondrion, nucleus	98.02	98.02
VIT_16s0098g01760.t01	Wine grape	cytosol, mitochondrion, nucleus	77.78	78.16
KRH64428	Soybean	cytosol, mitochondrion, nucleus	72.59	73.87
AT5G53000.1	Thale cress	cytosol	71.11	71.11
Bra003091.1-P	Field mustard	nucleus	70.37	70.37
CDY19650	Canola	cytosol	70.37	70.37
CDY50498	Canola	cytosol	68.4	70.13
KRH53508	Soybean	endoplasmic reticulum, golgi, plastid	72.84	69.74
Os12t0137500-01	Rice	cytosol	66.67	64.59
Os11t0141000-02	Rice	cytosol	65.93	63.88
EES07947	Sorghum	cytosol	65.43	63.55
TraesCS5D01G142100.1	Wheat	nucleus	64.44	63.04
TraesCS5B01G134400.1	Wheat	nucleus	64.44	63.04
TraesCS5A01G135500.1	Wheat	nucleus	64.44	63.04
Zm00001d052462_P001	Maize	cytosol, mitochondrion, nucleus	65.68	62.88
HORVU5Hr1G043520.1	Barley	nucleus	63.7	62.32
CDX96173	Canola	cytosol	38.02	62.1
KRH75240	Soybean	cytosol	12.35	61.73
Zm00001d004976_P002	Maize	cytosol, mitochondrion, nucleus	64.69	61.22
KRH05100	Soybean	cytosol, endoplasmic reticulum, nucleus	9.88	59.7
OQU87588	Sorghum	cytosol	16.54	51.94
OQU89556	Sorghum	mitochondrion	16.54	48.55
KXG25489	Sorghum	cytosol, mitochondrion	24.69	42.92
GSMUA_Achr4P09120_001	Banana	endoplasmic reticulum, plasma membrane	19.26	30.23

Protein Annotations

Gene3D:1.25.40.540	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0006808
GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009409	GO:GO:0009628	GO:GO:0009719	GO:GO:0009737	GO:GO:0009791	GO:GO:0009966
GO:GO:0009987	GO:GO:0010187	GO:GO:0016043	GO:GO:0016049	GO:GO:0019538	GO:GO:0019888
GO:GO:0019900	GO:GO:0019903	GO:GO:0030234	GO:GO:0030307	GO:GO:0031929	GO:GO:0032008
GO:GO:0035303	GO:GO:0040007	GO:GO:0043666	GO:GO:0050790	GO:GO:0051721	InterPro:IPR038511
UniProt:K4ASH7	PFAM:PF04177	PANTHER:PTHR10933	PANTHER:PTHR10933:SF9	EnsemblPlantsGene:Solyc01g006110.2	EnsemblPlants:Solyc01g006110.2.1
InterPro:TAP42/TAP46-like_sf	InterPro:TAP46-like	UniParc:UPI0002761ECA	SEG:seg	:	:

Description

PP2A regulatory subunit TAP46 [Source:Projected from Arabidopsis thaliana (AT5G53000) UniProtKB/Swiss-Prot;Acc:Q8LDQ4]

Coordinates

chr1:-:766543..772337

Molecular Weight (calculated)

45975.1 Da

IEP (calculated)

4.671

GRAVY (calculated)

-0.753

Length

405 amino acids

Sequence
(BLAST)

001: MGELNMQEMP LPALFEQAKK IHDLASESSV DQGIVRKGCE ILRVCEEMIG KLGLFSLNET KDDISTANLK YILVPYYLAE LTEKIAEDDR IEVLKASQAK
101: LKEFISFCET MELVPEDEIE TSTQGGSSSS VDRRAKKIAR FKRQRAAESK LLELKERRER RGRSTKAAAL SSPVETGEED VFDDDGEEER EAWLTTISLA
201: LCKAFDLLEM LKKEEEILSA VREKQLRDGE KEFSQLILDE RTQKVESWHR DAAARARYTK PAAPITCATF AQDVIEGRAK VSQAHDHKHQ PLLFGPASLV
301: GMNPTTERQR IAAQVFQPHY RLPTMSIEEA GLTEMNMMNE WQERNVKLME EATSSWYNDG PKTRPNEDDE EDDNDDAAQE KARAWDDWKD DNPRGAGNKK
401: LTPCG

Best Arabidopsis Sequence Match ( AT5G53000.1 )
(BLAST)

001: MGGLAMEEMP LSVLFEQARK IHLAASESGV DQDVVKKGCE MFQKCEDMIG KLALFSSNET KEDISTNNLK YLLVPYYLAE LTEKIIQEDR IQIVKASYAK
101: LKEFFSFCEA MELVPDEELE ASSRGGSGAP ADRRALKIAR FKRQKAAEAK LLEIKERKER RGRSTKASAL STPVESGEDD IPDDDSEEER EAWLSSINLA
201: ICKAIDLLEM LKREEEMLSA IKERQLKDGE GGFSRDALDD RTKKAETWHR DAAARIQYSK PAQPITCATF AQDVLEGRAS VSQGHEHKNQ PLIFGPASIV
301: GGPLSTERER MIAQVFQPSH RMPTMCIEDA GLTEMNIMND WQEQTKKAIE EATTSWYNDK PLRRKEEDEE DDDEDEEAVM KARAFDDWKD DNPRGAGNKK
401: LTPCG

Arabidopsis Description

TAP46PP2A regulatory subunit TAP46 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDQ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.