CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plastid

Predictor Summary:

nucleus 2
cytosol 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64428	Soybean	cytosol, mitochondrion, nucleus	88.18	93.72
KRH05100	Soybean	cytosol, endoplasmic reticulum, nucleus	13.48	85.07
KRH75240	Soybean	cytosol	16.08	83.95
VIT_16s0098g01760.t01	Wine grape	cytosol, mitochondrion, nucleus	71.63	75.19
PGSC0003DMT400010943	Potato	nucleus	50.59	73.79
Solyc01g006110.2.1	Tomato	cytosol	69.74	72.84
PGSC0003DMT400081985	Potato	cytosol, mitochondrion, nucleus	68.79	71.85
CDY19650	Canola	cytosol	68.09	71.11
Bra003091.1-P	Field mustard	nucleus	67.61	70.62
CDY50498	Canola	cytosol	65.48	70.13
AT5G53000.1	Thale cress	cytosol	66.67	69.63
EES07947	Sorghum	cytosol	64.07	64.99
TraesCS5D01G142100.1	Wheat	nucleus	62.17	63.53
TraesCS5A01G135500.1	Wheat	nucleus	62.17	63.53
Os12t0137500-01	Rice	cytosol	62.65	63.4
Zm00001d052462_P001	Maize	cytosol, mitochondrion, nucleus	63.36	63.36
TraesCS5B01G134400.1	Wheat	nucleus	61.94	63.28
HORVU5Hr1G043520.1	Barley	nucleus	61.47	62.8
Os11t0141000-02	Rice	cytosol	61.94	62.68
Zm00001d004976_P002	Maize	cytosol, mitochondrion, nucleus	62.41	61.68
CDX96173	Canola	cytosol	35.93	61.29
OQU87588	Sorghum	cytosol	17.26	56.59
OQU89556	Sorghum	mitochondrion	16.55	50.72
KXG25489	Sorghum	cytosol, mitochondrion	23.88	43.35

Protein Annotations

Gene3D:1.25.40.540	EntrezGene:100780847	MapMan:35.1	EMBL:ACUP02003471	EnsemblPlantsGene:GLYMA_06G129600	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009966	GO:GO:0009987	GO:GO:0019538	GO:GO:0019888	GO:GO:0030234	GO:GO:0035303
GO:GO:0043666	GO:GO:0050790	GO:GO:0051721	UniProt:I1KAT4	InterPro:IPR038511	EnsemblPlants:KRH53508
ProteinID:KRH53508	ProteinID:KRH53508.1	PFAM:PF04177	PANTHER:PTHR10933	PANTHER:PTHR10933:SF9	InterPro:TAP42/TAP46-like_sf
InterPro:TAP46-like	UniParc:UPI00023C389E	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:10645969..10650427

Molecular Weight (calculated)

48010.8 Da

IEP (calculated)

5.572

GRAVY (calculated)

-0.653

Length

423 amino acids

Sequence
(BLAST)

001: MEDVPLPALF EQARKIHNSA TATASAADQV RFSLLILSLF FFFCVLHRFV FGVREVVKKG CEALHRCEDM VNNLGLFSPN ETKEDISTTN LKYILVPFYL
101: AELTEKLAQD DRIHILKASQ AKLKEFISFC EAMELVPKEE LESYIEGASK TVADQRARKI ARFKRQRAAE SKLLEIKEQK ERRGRSTKAA ALSTPVEAGE
201: EEVLDDDGEE EREAWITTIS LAICKALDLL DMLKKEEEML SAVKDRQSKD GDKEFSKDVL DERAKKAEAW HHDSAVRARY TKPSSPITCA TFAQDVLEGR
301: AKASQAHDHK HQPLIFGPAS LVNGNITTER ERMAAQVFQP SHRMPTMSIE EAGLKEMEIM NKWQERNVRL MEEANSSWHN DRKSKPGEDD DEDDAAQEKA
401: RAWDDWKDDN PRGAGNKRLT PCG

Best Arabidopsis Sequence Match ( AT5G53000.1 )
(BLAST)

001: MGGLAMEEMP LSVLFEQARK IHLAASESGV DQDVVKKGCE MFQKCEDMIG KLALFSSNET KEDISTNNLK YLLVPYYLAE LTEKIIQEDR IQIVKASYAK
101: LKEFFSFCEA MELVPDEELE ASSRGGSGAP ADRRALKIAR FKRQKAAEAK LLEIKERKER RGRSTKASAL STPVESGEDD IPDDDSEEER EAWLSSINLA
201: ICKAIDLLEM LKREEEMLSA IKERQLKDGE GGFSRDALDD RTKKAETWHR DAAARIQYSK PAQPITCATF AQDVLEGRAS VSQGHEHKNQ PLIFGPASIV
301: GGPLSTERER MIAQVFQPSH RMPTMCIEDA GLTEMNIMND WQEQTKKAIE EATTSWYNDK PLRRKEEDEE DDDEDEEAVM KARAFDDWKD DNPRGAGNKK
401: LTPCG

Arabidopsis Description

TAP46PP2A regulatory subunit TAP46 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDQ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.