Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 2
- peroxisome 2
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr3P24120_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G51000.1 | GSMUA_Achr3P24120_001 | AT2G26740.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P14130_001 | Banana | cytosol | 71.43 | 10.84 |
| AT3G51000.1 | Thale cress | cytosol | 34.69 | 5.26 |
| VIT_04s0023g02610.t01 | Wine grape | golgi, mitochondrion, peroxisome | 32.65 | 5.03 |
| GSMUA_Achr8P22510_001 | Banana | peroxisome | 26.53 | 4.76 |
| Bra036841.1-P | Field mustard | peroxisome | 28.57 | 4.39 |
| CDY26530 | Canola | peroxisome | 28.57 | 4.32 |
| CDY33304 | Canola | peroxisome | 28.57 | 4.32 |
| Bra038876.1-P | Field mustard | peroxisome | 28.57 | 4.28 |
| CDX77971 | Canola | cytosol, peroxisome, plastid | 26.53 | 4.01 |
| GSMUA_AchrUn_... | Banana | peroxisome | 24.49 | 3.79 |
| KRH08141 | Soybean | cytosol | 24.49 | 3.67 |
| KRH69845 | Soybean | cytosol | 24.49 | 3.67 |
| GSMUA_Achr3P08130_001 | Banana | cytosol | 22.45 | 3.47 |
| GSMUA_Achr8P10290_001 | Banana | cytosol | 20.41 | 3.13 |
| CDX90672 | Canola | mitochondrion | 26.53 | 2.73 |
| GSMUA_Achr5P19770_001 | Banana | cytosol | 4.08 | 1.92 |
| CDX73754 | Canola | cytosol, peroxisome, plastid | 6.12 | 1.75 |
| CDY28994 | Canola | mitochondrion | 24.49 | 1.66 |
| GSMUA_Achr3P24120_001 | Banana | cytosol | 18.37 | 1.42 |
| CDX90673 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P19790_001 | EnsemblPlants:GSMUA_Achr5T19790_001 | EnsemblPlantsGene:GSMUA_Achr5G19790_001 | Gene3D:3.40.50.1820 | InterPro:AB_hydrolase | InterPro:IPR029058 |
| PANTHER:PTHR43329 | PANTHER:PTHR43329:SF19 | SUPFAM:SSF53474 | UniParc:UPI000295248D | UniProt:M0T008 | MapMan:35.2 |
Description
hydrolase, alpha/beta fold family domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G19790_001]
Coordinates
chr5:+:21397938..21398087
Molecular Weight (calculated)
5873.0 Da
IEP (calculated)
5.482
GRAVY (calculated)
-0.373
Length
49 amino acids
Sequence
(BLAST)
(BLAST)
1: MENYVRSGTL KHFVPDLEIK YIPEESHFVQ EQFPDQVNQL VITFLKNHI
001: MTSSVREKKI KTNGIWLNVA EKGDEEGPLV LLLHGFPETW YSWRHQIDFL SSHGYHVVAP DLRGYGDSDS LPSHESYTVS HLVADVIGLL DHYGTTQAFV
101: AGHDWGAIIG WCLCLFRPDR VKGFISLSVP YFPRDPKLKP SDFFKIFGDG LYITQFQKPG RAEAAFAKHD CLSVMKKFLL ITRTDYLVAP PDTEIIDHLE
201: IPSTIPDWIT EEEIQVYAEK FQRSGFTGPL NYYRSMDMNW EILAPWQDSK IVVPTKFIAG DKDIGYEGPN GTMEYVKGEV FKIVVPNLEI VVIEGGHHFI
301: QQEKSEQVSQ EILSFLNKLS KTE
101: AGHDWGAIIG WCLCLFRPDR VKGFISLSVP YFPRDPKLKP SDFFKIFGDG LYITQFQKPG RAEAAFAKHD CLSVMKKFLL ITRTDYLVAP PDTEIIDHLE
201: IPSTIPDWIT EEEIQVYAEK FQRSGFTGPL NYYRSMDMNW EILAPWQDSK IVVPTKFIAG DKDIGYEGPN GTMEYVKGEV FKIVVPNLEI VVIEGGHHFI
301: QQEKSEQVSQ EILSFLNKLS KTE
Arabidopsis Description
AT3g51000/F24M12_40 [Source:UniProtKB/TrEMBL;Acc:Q9SD45]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.