CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77049
CDX77050
CDX77051
CDY48181

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51000.1	CDX77049	AT2G26740.1	21798944
AT3G51000.1	CDX77050	AT2G26740.1	21798944
AT3G51000.1	CDX77051	AT2G26740.1	21798944
AT3G51000.1	CDY48181	AT2G26740.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33304	Canola	peroxisome	53.46	78.7
CDY26530	Canola	peroxisome	53.46	78.7
AT3G51000.1	Thale cress	cytosol	52.41	77.4
CDX77971	Canola	cytosol, peroxisome, plastid	50.52	74.38
CDX73754	Canola	cytosol, peroxisome, plastid	23.9	66.67
CDY28994	Canola	mitochondrion	97.06	64.22
KRH69845	Soybean	cytosol	40.25	58.72
KRH08141	Soybean	cytosol	40.04	58.41
VIT_04s0023g02610.t01	Wine grape	golgi, mitochondrion, peroxisome	38.36	57.55
Os12t0636400-01	Rice	cytosol, peroxisome	33.33	49.07
TraesCS5D01G065000.1	Wheat	cytosol	32.91	48.16
Zm00001d041217_P002	Maize	extracellular	32.29	47.53
OQU79732	Sorghum	cytosol	32.08	47.37
TraesCS6A01G029300.1	Wheat	cytosol	32.29	47.09
Zm00001d031203_P001	Maize	cytosol	32.29	46.81
TraesCS5A01G053600.1	Wheat	cytosol	32.91	46.73
EES17493	Sorghum	cytosol	31.87	46.63
Zm00001d031204_P003	Maize	cytosol	32.08	44.87
HORVU6Hr1G005400.4	Barley	cytosol, peroxisome, plastid	32.91	43.25
CDY65636	Canola	peroxisome	28.51	43.04
CDY50394	Canola	peroxisome	28.3	42.72
CDY50393	Canola	cytosol	22.22	42.57
CDY05187	Canola	cytosol	30.19	42.35
CDY27752	Canola	cytosol	30.19	42.35
CDX77051	Canola	cytosol	14.47	42.07
CDY65635	Canola	cytosol	27.67	41.9
CDY48181	Canola	peroxisome	26.83	40.13
CDY09722	Canola	cytosol	26.21	37.99
CDX90550	Canola	cytosol	26.0	37.58
CDX90553	Canola	cytosol	25.58	37.42
CDY09727	Canola	cytosol	25.58	37.31
CDY57860	Canola	cytosol	23.27	36.51
CDX77049	Canola	peroxisome	12.37	35.98
CDX77050	Canola	peroxisome	12.37	35.98
HORVU5Hr1G012890.5	Barley	plastid	22.85	33.33
GSMUA_Achr5P19790_001	Banana	peroxisome	2.73	26.53
CDX90673	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX90672	EnsemblPlantsGene:GSBRNA2T00151327001	Gene3D:3.40.50.1820	GO:A0A078DNW2	GO:GO:0003674	GO:GO:0003824
InterPro:AB_hydrolase	InterPro:AB_hydrolase_1	InterPro:Epox_hydrolase-like	InterPro:IPR029058	PANTHER:PTHR43689	PANTHER:PTHR43689:SF5
PFAM:PF12697	PRINTS:PR00412	ProteinID:CDX90672	ProteinID:CDX90672.1	SEG:seg	SUPFAM:SSF53474
UniParc:UPI0004EDD28B	MapMan:35.2	:	:	:	:

Description

BnaA03g41090D

Coordinates

chrLK031863:+:1426083..1428786

Molecular Weight (calculated)

54302.8 Da

IEP (calculated)

10.295

GRAVY (calculated)

-0.487

Length

477 amino acids

Sequence
(BLAST)

001: MGFGAIRSIL RPLSRTLVSR VASSCSSAPA IPAAKPELCS LFGGSRLPWI AMATHFHSLS LTDTRLPKRR PMAHPKKKRF KLKPPGPYAY VQYTPGEPIA
101: SNNPNKGSVK RRNAKKRIGQ RRAFILSEKK KRQGLVQEAK RKKRIKEVER KMAKVARERA WEERLAELQR LEEEKKKIMT TSLAREKKIK TNGIWLNVAE
201: KGDDGGPLVL LLHGFPETWF SWRHQIDYLS SHGYHVVAPD LRGYGESEFL PSHESYTVSH LVADVIGWSL CLFRPDRVKG FISLSVPYSP RDPNLKPSEF
301: SKTFGDGLYI TQFQKPGRAE AAFAKHDCKT VMKKFLLTTR TDFMVAPPGT EIIDDLEIPS KIPEWITEEE IQVYADKFQK SGFTGPLNYY RAMDLNWEIL
401: APWEGSKILV PTKFIAGGRD IGAKETMEYV KGEMFKSIVP NVEVVVIEDG HHFIQQEKSK QVSEEILSFF NKLRTTE

Best Arabidopsis Sequence Match ( AT3G51000.1 )
(BLAST)

001: MTSSVREKKI KTNGIWLNVA EKGDEEGPLV LLLHGFPETW YSWRHQIDFL SSHGYHVVAP DLRGYGDSDS LPSHESYTVS HLVADVIGLL DHYGTTQAFV
101: AGHDWGAIIG WCLCLFRPDR VKGFISLSVP YFPRDPKLKP SDFFKIFGDG LYITQFQKPG RAEAAFAKHD CLSVMKKFLL ITRTDYLVAP PDTEIIDHLE
201: IPSTIPDWIT EEEIQVYAEK FQRSGFTGPL NYYRSMDMNW EILAPWQDSK IVVPTKFIAG DKDIGYEGPN GTMEYVKGEV FKIVVPNLEI VVIEGGHHFI
301: QQEKSEQVSQ EILSFLNKLS KTE

Arabidopsis Description

AT3g51000/F24M12_40 [Source:UniProtKB/TrEMBL;Acc:Q9SD45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.