Factsheet for TraesCS6A01G029300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G175200.2
TraesCS3B01G204900.1
TraesCS3D01G180600.1
TraesCS7A01G222400.1
TraesCS7A01G222600.1
TraesCS7A01G225600.1
TraesCS7B01G128800.1
TraesCS7B01G128900.1
TraesCS7B01G129100.1
TraesCS7B01G194000.1
TraesCS7D01G224000.1
TraesCS7D01G224200.1
TraesCS7D01G228900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51000.1	TraesCS3A01G175200.2	AT2G26740.1	21798944
AT3G51000.1	TraesCS3B01G204900.1	AT2G26740.1	21798944
AT3G51000.1	TraesCS3D01G180600.1	AT2G26740.1	21798944
AT3G51000.1	TraesCS7A01G222400.1	AT2G26740.1	21798944
AT3G51000.1	TraesCS7A01G222600.1	AT2G26740.1	21798944
AT3G51000.1	TraesCS7A01G225600.1	AT2G26740.1	21798944
AT3G51000.1	TraesCS7B01G128800.1	AT2G26740.1	21798944
AT3G51000.1	TraesCS7B01G128900.1	AT2G26740.1	21798944
AT3G51000.1	TraesCS7B01G129100.1	AT2G26740.1	21798944
AT3G51000.1	TraesCS7B01G194000.1	AT2G26740.1	21798944
AT3G51000.1	TraesCS7D01G224000.1	AT2G26740.1	21798944
AT3G51000.1	TraesCS7D01G224200.1	AT2G26740.1	21798944
AT3G51000.1	TraesCS7D01G228900.1	AT2G26740.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G053600.1	Wheat	cytosol	85.02	82.74
HORVU6Hr1G005400.4	Barley	cytosol, peroxisome, plastid	90.83	81.82
Os12t0636400-01	Rice	cytosol, peroxisome	75.84	76.54
OQU79732	Sorghum	cytosol	74.92	75.85
Zm00001d041217_P002	Maize	extracellular	72.17	72.84
EES17493	Sorghum	cytosol	70.64	70.86
Zm00001d031203_P001	Maize	cytosol	70.64	70.21
Zm00001d031204_P003	Maize	cytosol	73.09	70.09
VIT_04s0023g02610.t01	Wine grape	golgi, mitochondrion, peroxisome	55.96	57.55
VIT_15s0021g02470.t01	Wine grape	cytosol	55.35	57.1
VIT_03s0038g00090.t01	Wine grape	cytosol	21.71	56.35
KRH69845	Soybean	cytosol	54.13	54.13
KRH08141	Soybean	cytosol	52.6	52.6
CDY33304	Canola	peroxisome	51.99	52.47
CDY26530	Canola	peroxisome	51.99	52.47
AT3G51000.1	Thale cress	cytosol	51.68	52.32
Bra038876.1-P	Field mustard	peroxisome	51.68	51.68
Bra036841.1-P	Field mustard	peroxisome	49.85	51.1
CDX77971	Canola	cytosol, peroxisome, plastid	50.46	50.93
TraesCS7A01G222400.1	Wheat	cytosol	45.57	49.17
TraesCS7A01G225600.1	Wheat	cytosol	47.71	48.45
TraesCS3A01G175200.2	Wheat	peroxisome	47.4	48.14
TraesCS3A01G255200.1	Wheat	peroxisome	46.18	47.34
CDX73754	Canola	cytosol, peroxisome, plastid	24.16	46.2
GSMUA_Achr5P19770_001	Banana	cytosol	14.68	46.15
TraesCS4A01G366100.1	Wheat	peroxisome	47.09	45.97
TraesCS3A01G538800.2	Wheat	cytosol	35.47	44.62
TraesCS7A01G222600.1	Wheat	golgi, unclear	47.71	44.32
TraesCS4A01G366000.1	Wheat	peroxisome	45.57	43.31
TraesCS3A01G536800.1	Wheat	cytosol	42.2	42.2
TraesCS1A01G170700.1	Wheat	cytosol, peroxisome, plastid	36.09	37.94
TraesCS1A01G170600.1	Wheat	cytosol	36.39	37.66
CDX90672	Canola	mitochondrion	47.09	32.29
TraesCS2A01G526600.1	Wheat	plastid	18.04	25.54
CDY28994	Canola	mitochondrion	47.09	21.36
CDX90673	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS6A01G029300.1	EnsemblPlantsGene:TraesCS6A01G029300	Gene3D:3.40.50.1820	GO:GO:0003674	GO:GO:0003824	InterPro:AB_hydrolase
InterPro:AB_hydrolase_1	InterPro:Epox_hydrolase-like	InterPro:IPR029058	PANTHER:PTHR43329	PANTHER:PTHR43329:SF5	PFAM:PF00561
PRINTS:PR00111	PRINTS:PR00412	SEG:seg	SUPFAM:SSF53474	MapMan:35.2	:

Description

No Description!

Coordinates

chr6A:+:15452674..15455238

Molecular Weight (calculated)

36082.1 Da

IEP (calculated)

6.186

GRAVY (calculated)

-0.128

Length

327 amino acids

Sequence
(BLAST)

001: MDENGGVRHW HADVNGVSLH VAEQGPADGP AVLLLHGFPE LWLSWRHQMA ALAARGFRAL APDLRGFGDS SAPADPAAYT ILHVVGDVVA LLDHLRLPKV
101: VVVGHDLGAQ AAWHLCLFRP DRVRAVVALG VPFFPRSPGP VSEMFAARGD GFYITQYQEP GRTERAFNRY AAATVLKKLY SIKLDDLTAP PGVEIIDFLE
201: SSSSPLPWMA EEELGQYAEK FQKSGFTGPL NYYRMMDTNW MLTAPWHGAK ITVPAKFIGG EKDTGVQSFG IKHYIESGAF KFSVPNLEVA IIEGHHYLQQ
301: EQAERVNSEI LSFLDKLSGE ETPKCPY

Best Arabidopsis Sequence Match ( AT3G51000.1 )
(BLAST)

001: MTSSVREKKI KTNGIWLNVA EKGDEEGPLV LLLHGFPETW YSWRHQIDFL SSHGYHVVAP DLRGYGDSDS LPSHESYTVS HLVADVIGLL DHYGTTQAFV
101: AGHDWGAIIG WCLCLFRPDR VKGFISLSVP YFPRDPKLKP SDFFKIFGDG LYITQFQKPG RAEAAFAKHD CLSVMKKFLL ITRTDYLVAP PDTEIIDHLE
201: IPSTIPDWIT EEEIQVYAEK FQRSGFTGPL NYYRSMDMNW EILAPWQDSK IVVPTKFIAG DKDIGYEGPN GTMEYVKGEV FKIVVPNLEI VVIEGGHHFI
301: QQEKSEQVSQ EILSFLNKLS KTE

Arabidopsis Description

AT3g51000/F24M12_40 [Source:UniProtKB/TrEMBL;Acc:Q9SD45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.