Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- peroxisome 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G029300.1 | Wheat | cytosol | 81.82 | 90.83 |
| OQU79732 | Sorghum | cytosol | 67.77 | 76.16 |
| Os12t0636400-01 | Rice | cytosol, peroxisome | 67.77 | 75.93 |
| Zm00001d041217_P002 | Maize | extracellular | 65.29 | 73.15 |
| EES17493 | Sorghum | cytosol | 64.74 | 72.09 |
| Zm00001d031203_P001 | Maize | cytosol | 65.29 | 72.04 |
| Zm00001d031204_P003 | Maize | cytosol | 66.12 | 70.38 |
| VIT_04s0023g02610.t01 | Wine grape | golgi, mitochondrion, peroxisome | 50.69 | 57.86 |
| VIT_15s0021g02470.t01 | Wine grape | cytosol | 50.14 | 57.41 |
| VIT_03s0038g00090.t01 | Wine grape | cytosol | 19.28 | 55.56 |
| KRH69845 | Soybean | cytosol | 49.04 | 54.43 |
| HORVU5Hr1G012890.5 | Barley | plastid | 48.48 | 53.82 |
| CDY33304 | Canola | peroxisome | 47.11 | 52.78 |
| CDY26530 | Canola | peroxisome | 47.11 | 52.78 |
| AT3G51000.1 | Thale cress | cytosol | 46.83 | 52.63 |
| KRH08141 | Soybean | cytosol | 47.38 | 52.6 |
| Bra038876.1-P | Field mustard | peroxisome | 46.83 | 51.99 |
| CDX77971 | Canola | cytosol, peroxisome, plastid | 46.01 | 51.54 |
| Bra036841.1-P | Field mustard | peroxisome | 45.18 | 51.41 |
| HORVU3Hr1G070810.3 | Barley | cytosol, peroxisome | 13.77 | 48.54 |
| CDX73754 | Canola | cytosol, peroxisome, plastid | 22.31 | 47.37 |
| HORVU7Hr1G045640.2 | Barley | plastid | 45.45 | 46.88 |
| GSMUA_Achr5P19770_001 | Banana | cytosol | 13.22 | 46.15 |
| HORVU5Hr1G115720.9 | Barley | peroxisome | 41.05 | 40.38 |
| HORVU3Hr1G035400.1 | Barley | plastid | 44.35 | 39.75 |
| HORVU1Hr1G044770.1 | Barley | cytosol, peroxisome | 32.78 | 38.14 |
| HORVU7Hr1G045620.2 | Barley | cytosol, mitochondrion, peroxisome | 15.98 | 37.66 |
| HORVU7Hr1G075860.1 | Barley | mitochondrion | 7.44 | 37.5 |
| HORVU3Hr1G070830.1 | Barley | cytosol, peroxisome | 17.91 | 37.36 |
| HORVU2Hr1G116250.4 | Barley | peroxisome | 27.27 | 34.14 |
| CDX90672 | Canola | mitochondrion | 43.25 | 32.91 |
| HORVU1Hr1G044740.2 | Barley | plastid | 33.61 | 31.2 |
| HORVU7Hr1G042520.1 | Barley | cytosol | 13.22 | 30.57 |
| HORVU2Hr1G116180.3 | Barley | peroxisome | 16.53 | 26.55 |
| HORVU5Hr1G115800.1 | Barley | peroxisome | 17.63 | 24.43 |
| HORVU5Hr1G115780.1 | Barley | peroxisome | 20.94 | 23.46 |
| CDY28994 | Canola | mitochondrion | 43.53 | 21.91 |
| HORVU1Hr1G009090.4 | Barley | peroxisome | 12.12 | 18.64 |
| CDX90673 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G005400.4 | EnsemblPlantsGene:HORVU6Hr1G005400 | Gene3D:3.40.50.1820 | GO:GO:0003674 | GO:GO:0003824 | InterPro:AB_hydrolase |
| InterPro:AB_hydrolase_1 | InterPro:Epox_hydrolase-like | InterPro:IPR029058 | PANTHER:PTHR43329 | PANTHER:PTHR43329:SF5 | PFAM:PF00561 |
| PRINTS:PR00111 | PRINTS:PR00412 | SEG:seg | SUPFAM:SSF53474 | UniParc:UPI000B487D11 | UniProt:A0A287T7G8 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:12017541..12019577
Molecular Weight (calculated)
40366.3 Da
IEP (calculated)
6.514
GRAVY (calculated)
-0.096
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: KILDLGKSCV LNVDRSLLTF LFSSPSFFAR RVQKSTRPLA MEENGGVRHW NADVNGVSLH VAEQGPAAGP AVLLLHGFPE LWMSWRHQMA ALAARGYRAL
101: APDLRGFGDS SAPADPAAYT VLHVVGDLVA LLDHLRLTKV VVVGHDLGAQ AAWHLCLFRP DRVRAVVALG VPYFPRSPRP VTEMFAARGD GFYITQYQEP
201: GRAERAFDRY DAATVLKKFY SIELDDLTAP PGVEIIDFLE ASSSPLPWMT EELCRYAEKF QKSGFTGPLN YYRVMDTNWM LTAPWHGAKI TVPAKFIGGE
301: KDTGVESFGI KHYIESGAFK LSVPDLEVAI IEGHHYLQQE QAERVNSEIL SFLDKFFGEE TPK
101: APDLRGFGDS SAPADPAAYT VLHVVGDLVA LLDHLRLTKV VVVGHDLGAQ AAWHLCLFRP DRVRAVVALG VPYFPRSPRP VTEMFAARGD GFYITQYQEP
201: GRAERAFDRY DAATVLKKFY SIELDDLTAP PGVEIIDFLE ASSSPLPWMT EELCRYAEKF QKSGFTGPLN YYRVMDTNWM LTAPWHGAKI TVPAKFIGGE
301: KDTGVESFGI KHYIESGAFK LSVPDLEVAI IEGHHYLQQE QAERVNSEIL SFLDKFFGEE TPK
001: MTSSVREKKI KTNGIWLNVA EKGDEEGPLV LLLHGFPETW YSWRHQIDFL SSHGYHVVAP DLRGYGDSDS LPSHESYTVS HLVADVIGLL DHYGTTQAFV
101: AGHDWGAIIG WCLCLFRPDR VKGFISLSVP YFPRDPKLKP SDFFKIFGDG LYITQFQKPG RAEAAFAKHD CLSVMKKFLL ITRTDYLVAP PDTEIIDHLE
201: IPSTIPDWIT EEEIQVYAEK FQRSGFTGPL NYYRSMDMNW EILAPWQDSK IVVPTKFIAG DKDIGYEGPN GTMEYVKGEV FKIVVPNLEI VVIEGGHHFI
301: QQEKSEQVSQ EILSFLNKLS KTE
101: AGHDWGAIIG WCLCLFRPDR VKGFISLSVP YFPRDPKLKP SDFFKIFGDG LYITQFQKPG RAEAAFAKHD CLSVMKKFLL ITRTDYLVAP PDTEIIDHLE
201: IPSTIPDWIT EEEIQVYAEK FQRSGFTGPL NYYRSMDMNW EILAPWQDSK IVVPTKFIAG DKDIGYEGPN GTMEYVKGEV FKIVVPNLEI VVIEGGHHFI
301: QQEKSEQVSQ EILSFLNKLS KTE
Arabidopsis Description
AT3g51000/F24M12_40 [Source:UniProtKB/TrEMBL;Acc:Q9SD45]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.