Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- peroxisome 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d023651_P001 | |
| Zm00001d040290_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G51000.1 | Zm00001d023651_P001 | AT2G26740.1 | 21798944 |
| AT3G51000.1 | Zm00001d040290_P001 | AT2G26740.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU79732 | Sorghum | cytosol | 85.34 | 90.09 |
| Zm00001d041217_P002 | Maize | extracellular | 83.28 | 87.65 |
| TraesCS5D01G065000.1 | Wheat | cytosol | 73.31 | 76.69 |
| Os12t0636400-01 | Rice | cytosol, peroxisome | 71.55 | 75.31 |
| TraesCS5A01G053600.1 | Wheat | cytosol | 73.31 | 74.4 |
| Zm00001d031203_P001 | Maize | cytosol | 71.26 | 73.86 |
| TraesCS6A01G029300.1 | Wheat | cytosol | 70.09 | 73.09 |
| HORVU6Hr1G005400.4 | Barley | cytosol, peroxisome, plastid | 70.38 | 66.12 |
| Zm00001d012908_P001 | Maize | peroxisome | 17.3 | 57.84 |
| VIT_15s0021g02470.t01 | Wine grape | cytosol | 51.61 | 55.52 |
| VIT_04s0023g02610.t01 | Wine grape | golgi, mitochondrion, peroxisome | 50.73 | 54.4 |
| VIT_03s0038g00090.t01 | Wine grape | cytosol | 19.65 | 53.17 |
| CDY33304 | Canola | peroxisome | 50.15 | 52.78 |
| AT3G51000.1 | Thale cress | cytosol | 49.56 | 52.32 |
| CDY26530 | Canola | peroxisome | 49.56 | 52.16 |
| Bra038876.1-P | Field mustard | peroxisome | 49.85 | 51.99 |
| KRH69845 | Soybean | cytosol | 49.27 | 51.38 |
| Bra036841.1-P | Field mustard | peroxisome | 47.51 | 50.78 |
| KRH08141 | Soybean | cytosol | 48.39 | 50.46 |
| CDX77971 | Canola | cytosol, peroxisome, plastid | 47.51 | 50.0 |
| HORVU5Hr1G012890.5 | Barley | plastid | 46.92 | 48.93 |
| GSMUA_Achr5P19770_001 | Banana | cytosol | 14.66 | 48.08 |
| Zm00001d034740_P001 | Maize | mitochondrion | 46.04 | 47.43 |
| Zm00001d040290_P001 | Maize | peroxisome | 48.39 | 46.35 |
| Zm00001d012909_P001 | Maize | extracellular | 44.28 | 45.62 |
| CDX73754 | Canola | cytosol, peroxisome, plastid | 22.87 | 45.61 |
| Zm00001d012907_P001 | Maize | peroxisome | 18.77 | 39.26 |
| Zm00001d023651_P001 | Maize | extracellular | 45.45 | 39.04 |
| Zm00001d032570_P002 | Maize | cytosol | 34.6 | 36.99 |
| Zm00001d013934_P001 | Maize | extracellular | 33.72 | 36.51 |
| CDX90672 | Canola | mitochondrion | 44.87 | 32.08 |
| CDY28994 | Canola | mitochondrion | 45.16 | 21.36 |
| CDX90673 | Canola | cytosol | 0.29 | 0.43 |
Protein Annotations
| EnsemblPlants:Zm00001d031204_P003 | EnsemblPlants:Zm00001d031204_T003 | EnsemblPlantsGene:Zm00001d031204 | Gene3D:3.40.50.1820 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0016787 | InterPro:AB_hydrolase | InterPro:AB_hydrolase_1 | InterPro:Epox_hydrolase-like | InterPro:IPR029058 | PANTHER:PTHR43329 |
| PANTHER:PTHR43329:SF5 | PFAM:PF12697 | PRINTS:PR00412 | ProteinID:ONM02308.1 | ProteinID:ONM02309.1 | SEG:seg |
| SUPFAM:SSF53474 | UniParc:UPI00084296AE | UniProt:A0A1D6KGV8 | MapMan:35.2 | : | : |
Description
alpha/beta-Hydrolases superfamily protein
Coordinates
chr1:-:181980743..181983808
Molecular Weight (calculated)
38069.2 Da
IEP (calculated)
5.361
GRAVY (calculated)
-0.034
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAGEVRHWN ADVNGVSIHV AERGPEDGPA VLLIHGFPEL WLSWRHQMAA LAARGFRALA PDLRGYGDSS VPSDPAAYTI FHIVGDIVAL LDHLQVPTHK
101: GAAFFPCRAL VSHLTIVFVV GHDWGAQVAW HLCLFRPDRV RAAAVLGIPY YARQAHPIME VFAAFGDGFY INQFQEPGRA EAAFAQYDVA TVLKKFYSIE
201: IDELTAPPGV EIIDFLEASP SPLPWLSEEE LGQYAEKFRK SGFTGPLNYY RMWETNWRLL APWNEAKITV PVKFIAGDKD IGVQSFGVEK YIKSGEFKST
301: VPDLEVAVIE GHHFLQQEQA ERVNSEIISY LVRFTSQEAS S
101: GAAFFPCRAL VSHLTIVFVV GHDWGAQVAW HLCLFRPDRV RAAAVLGIPY YARQAHPIME VFAAFGDGFY INQFQEPGRA EAAFAQYDVA TVLKKFYSIE
201: IDELTAPPGV EIIDFLEASP SPLPWLSEEE LGQYAEKFRK SGFTGPLNYY RMWETNWRLL APWNEAKITV PVKFIAGDKD IGVQSFGVEK YIKSGEFKST
301: VPDLEVAVIE GHHFLQQEQA ERVNSEIISY LVRFTSQEAS S
001: MTSSVREKKI KTNGIWLNVA EKGDEEGPLV LLLHGFPETW YSWRHQIDFL SSHGYHVVAP DLRGYGDSDS LPSHESYTVS HLVADVIGLL DHYGTTQAFV
101: AGHDWGAIIG WCLCLFRPDR VKGFISLSVP YFPRDPKLKP SDFFKIFGDG LYITQFQKPG RAEAAFAKHD CLSVMKKFLL ITRTDYLVAP PDTEIIDHLE
201: IPSTIPDWIT EEEIQVYAEK FQRSGFTGPL NYYRSMDMNW EILAPWQDSK IVVPTKFIAG DKDIGYEGPN GTMEYVKGEV FKIVVPNLEI VVIEGGHHFI
301: QQEKSEQVSQ EILSFLNKLS KTE
101: AGHDWGAIIG WCLCLFRPDR VKGFISLSVP YFPRDPKLKP SDFFKIFGDG LYITQFQKPG RAEAAFAKHD CLSVMKKFLL ITRTDYLVAP PDTEIIDHLE
201: IPSTIPDWIT EEEIQVYAEK FQRSGFTGPL NYYRSMDMNW EILAPWQDSK IVVPTKFIAG DKDIGYEGPN GTMEYVKGEV FKIVVPNLEI VVIEGGHHFI
301: QQEKSEQVSQ EILSFLNKLS KTE
Arabidopsis Description
AT3g51000/F24M12_40 [Source:UniProtKB/TrEMBL;Acc:Q9SD45]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.