Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- peroxisome 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d023651_P001 | |
| Zm00001d040290_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G51000.1 | Zm00001d023651_P001 | AT2G26740.1 | 21798944 |
| AT3G51000.1 | Zm00001d040290_P001 | AT2G26740.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU79732 | Sorghum | cytosol | 87.96 | 88.24 |
| Zm00001d031204_P003 | Maize | cytosol | 87.65 | 83.28 |
| TraesCS5D01G065000.1 | Wheat | cytosol | 75.0 | 74.54 |
| Os12t0636400-01 | Rice | cytosol, peroxisome | 73.15 | 73.15 |
| TraesCS5A01G053600.1 | Wheat | cytosol | 75.0 | 72.32 |
| TraesCS6A01G029300.1 | Wheat | cytosol | 72.84 | 72.17 |
| Zm00001d031203_P001 | Maize | cytosol | 72.53 | 71.43 |
| HORVU6Hr1G005400.4 | Barley | cytosol, peroxisome, plastid | 73.15 | 65.29 |
| Zm00001d012908_P001 | Maize | peroxisome | 19.14 | 60.78 |
| VIT_04s0023g02610.t01 | Wine grape | golgi, mitochondrion, peroxisome | 54.32 | 55.35 |
| VIT_15s0021g02470.t01 | Wine grape | cytosol | 53.7 | 54.89 |
| VIT_03s0038g00090.t01 | Wine grape | cytosol | 20.99 | 53.97 |
| CDY33304 | Canola | peroxisome | 53.4 | 53.4 |
| CDY26530 | Canola | peroxisome | 53.09 | 53.09 |
| Bra038876.1-P | Field mustard | peroxisome | 53.4 | 52.91 |
| AT3G51000.1 | Thale cress | cytosol | 52.16 | 52.32 |
| Bra036841.1-P | Field mustard | peroxisome | 50.93 | 51.72 |
| KRH69845 | Soybean | cytosol | 51.23 | 50.76 |
| CDX77971 | Canola | cytosol, peroxisome, plastid | 50.31 | 50.31 |
| KRH08141 | Soybean | cytosol | 50.0 | 49.54 |
| GSMUA_Achr5P19770_001 | Banana | cytosol | 15.12 | 47.12 |
| HORVU5Hr1G012890.5 | Barley | plastid | 47.22 | 46.79 |
| CDX73754 | Canola | cytosol, peroxisome, plastid | 24.38 | 46.2 |
| Zm00001d012909_P001 | Maize | extracellular | 46.91 | 45.92 |
| Zm00001d040290_P001 | Maize | peroxisome | 49.69 | 45.22 |
| Zm00001d034740_P001 | Maize | mitochondrion | 45.37 | 44.41 |
| Zm00001d023651_P001 | Maize | extracellular | 46.6 | 38.04 |
| Zm00001d032570_P002 | Maize | cytosol | 36.73 | 37.3 |
| Zm00001d013934_P001 | Maize | extracellular | 36.11 | 37.14 |
| Zm00001d012907_P001 | Maize | peroxisome | 18.21 | 36.2 |
| CDX90672 | Canola | mitochondrion | 47.53 | 32.29 |
| CDY28994 | Canola | mitochondrion | 47.53 | 21.36 |
| CDX90673 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Zm00001d041217_P002 | EnsemblPlants:Zm00001d041217_T002 | EnsemblPlantsGene:Zm00001d041217 | Gene3D:3.40.50.1820 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0016787 | InterPro:AB_hydrolase | InterPro:AB_hydrolase_1 | InterPro:Epox_hydrolase-like | InterPro:IPR029058 | PANTHER:PTHR43329 |
| PANTHER:PTHR43329:SF5 | PFAM:PF00561 | PRINTS:PR00412 | ProteinID:ONM32694.1 | SEG:seg | SUPFAM:SSF53474 |
| UniParc:UPI00084367CF | UniProt:A0A1D6MV47 | MapMan:35.2 | : | : | : |
Description
alpha/beta-Hydrolases superfamily protein
Coordinates
chr3:+:105966468..105968206
Molecular Weight (calculated)
35799.3 Da
IEP (calculated)
5.686
GRAVY (calculated)
-0.098
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MQHSMDAGEV RHWNADVNGV SIHVAERGPE DGPAVLLLHG FPELWLSWRH QMAALAARGF RALAPDLRGY GDSSAPSDPA AYSIFHIVGD VVALLDHLQL
101: TKVFVAGHDW GAHAAWLLCL FRPDRVRAAV VLGVPYSARH AHARPITEAF AAFGEGFYIN QFQEAGRAES AFARYDVATV LKKFYSIEID DVTAPPGVEI
201: IDFLEASPSP LPWISEEELG QYAEKFHKSG FTGPLNYYRM SETNSRLLAP WNGAKITVPV KFIAGDKDIG AQSFGTGEYI KSAEFKSTVP DLEVTVIEGH
301: HFLQQEQAER VNSEMVSYLV RFTS
101: TKVFVAGHDW GAHAAWLLCL FRPDRVRAAV VLGVPYSARH AHARPITEAF AAFGEGFYIN QFQEAGRAES AFARYDVATV LKKFYSIEID DVTAPPGVEI
201: IDFLEASPSP LPWISEEELG QYAEKFHKSG FTGPLNYYRM SETNSRLLAP WNGAKITVPV KFIAGDKDIG AQSFGTGEYI KSAEFKSTVP DLEVTVIEGH
301: HFLQQEQAER VNSEMVSYLV RFTS
001: MTSSVREKKI KTNGIWLNVA EKGDEEGPLV LLLHGFPETW YSWRHQIDFL SSHGYHVVAP DLRGYGDSDS LPSHESYTVS HLVADVIGLL DHYGTTQAFV
101: AGHDWGAIIG WCLCLFRPDR VKGFISLSVP YFPRDPKLKP SDFFKIFGDG LYITQFQKPG RAEAAFAKHD CLSVMKKFLL ITRTDYLVAP PDTEIIDHLE
201: IPSTIPDWIT EEEIQVYAEK FQRSGFTGPL NYYRSMDMNW EILAPWQDSK IVVPTKFIAG DKDIGYEGPN GTMEYVKGEV FKIVVPNLEI VVIEGGHHFI
301: QQEKSEQVSQ EILSFLNKLS KTE
101: AGHDWGAIIG WCLCLFRPDR VKGFISLSVP YFPRDPKLKP SDFFKIFGDG LYITQFQKPG RAEAAFAKHD CLSVMKKFLL ITRTDYLVAP PDTEIIDHLE
201: IPSTIPDWIT EEEIQVYAEK FQRSGFTGPL NYYRSMDMNW EILAPWQDSK IVVPTKFIAG DKDIGYEGPN GTMEYVKGEV FKIVVPNLEI VVIEGGHHFI
301: QQEKSEQVSQ EILSFLNKLS KTE
Arabidopsis Description
AT3g51000/F24M12_40 [Source:UniProtKB/TrEMBL;Acc:Q9SD45]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.