Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- peroxisome 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d023651_P001 | |
| Zm00001d040290_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G51000.1 | Zm00001d023651_P001 | AT2G26740.1 | 21798944 |
| AT3G51000.1 | Zm00001d040290_P001 | AT2G26740.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES17493 | Sorghum | cytosol | 89.67 | 90.49 |
| TraesCS5D01G065000.1 | Wheat | cytosol | 74.16 | 74.85 |
| Zm00001d041217_P002 | Maize | extracellular | 71.43 | 72.53 |
| Os12t0636400-01 | Rice | cytosol, peroxisome | 70.82 | 71.91 |
| Zm00001d031204_P003 | Maize | cytosol | 73.86 | 71.26 |
| TraesCS5A01G053600.1 | Wheat | cytosol | 72.64 | 71.13 |
| TraesCS6A01G029300.1 | Wheat | cytosol | 70.21 | 70.64 |
| HORVU6Hr1G005400.4 | Barley | cytosol, peroxisome, plastid | 72.04 | 65.29 |
| Zm00001d012908_P001 | Maize | peroxisome | 18.24 | 58.82 |
| VIT_15s0021g02470.t01 | Wine grape | cytosol | 53.5 | 55.52 |
| VIT_04s0023g02610.t01 | Wine grape | golgi, mitochondrion, peroxisome | 52.58 | 54.4 |
| AT3G51000.1 | Thale cress | cytosol | 51.98 | 52.94 |
| KRH69845 | Soybean | cytosol | 51.67 | 51.99 |
| CDY26530 | Canola | peroxisome | 51.06 | 51.85 |
| CDY33304 | Canola | peroxisome | 51.06 | 51.85 |
| Bra036841.1-P | Field mustard | peroxisome | 49.85 | 51.41 |
| KRH08141 | Soybean | cytosol | 51.06 | 51.38 |
| Bra038876.1-P | Field mustard | peroxisome | 50.76 | 51.07 |
| CDX77971 | Canola | cytosol, peroxisome, plastid | 50.15 | 50.93 |
| GSMUA_Achr5P19770_001 | Banana | cytosol | 15.81 | 50.0 |
| VIT_03s0038g00090.t01 | Wine grape | cytosol | 18.84 | 49.21 |
| CDX73754 | Canola | cytosol, peroxisome, plastid | 25.23 | 48.54 |
| Zm00001d012909_P001 | Maize | extracellular | 45.29 | 45.02 |
| Zm00001d034740_P001 | Maize | mitochondrion | 44.38 | 44.11 |
| HORVU5Hr1G012890.5 | Barley | plastid | 43.47 | 43.73 |
| Zm00001d040290_P001 | Maize | peroxisome | 47.11 | 43.54 |
| Zm00001d023651_P001 | Maize | extracellular | 48.33 | 40.05 |
| Zm00001d032570_P002 | Maize | cytosol | 38.3 | 39.5 |
| Zm00001d013934_P001 | Maize | extracellular | 36.78 | 38.41 |
| Zm00001d012907_P001 | Maize | peroxisome | 18.24 | 36.81 |
| CDX90672 | Canola | mitochondrion | 46.81 | 32.29 |
| CDY28994 | Canola | mitochondrion | 47.42 | 21.64 |
| CDX90673 | Canola | cytosol | 0.3 | 0.43 |
Protein Annotations
| EntrezGene:100281378 | Gene3D:3.40.50.1820 | MapMan:35.2 | InterPro:AB_hydrolase | InterPro:AB_hydrolase_1 | UniProt:B6SUW2 |
| EMBL:BT060489 | EMBL:EU956527 | InterPro:Epox_hydrolase-like | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016787 |
| InterPro:IPR029058 | ProteinID:ONM02307.1 | PFAM:PF00561 | PRINTS:PR00111 | PRINTS:PR00412 | PANTHER:PTHR43329 |
| PANTHER:PTHR43329:SF5 | SUPFAM:SSF53474 | UniParc:UPI000182B35F | EnsemblPlantsGene:Zm00001d031203 | EnsemblPlants:Zm00001d031203_P001 | EnsemblPlants:Zm00001d031203_T001 |
| SEG:seg | : | : | : | : | : |
Description
alpha/beta-Hydrolases superfamily protein
Coordinates
chr1:-:181978320..181979932
Molecular Weight (calculated)
36299.4 Da
IEP (calculated)
6.000
GRAVY (calculated)
-0.059
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAEAAAAEG QVRHWTADVN GISLHVAERG AADAPAVLLI HGFPELWLSW RHQMAALAAR GFRALAPDLR GYGDSSVPTD PAAYSILHLV GDLVALLDHL
101: QLTKVFVVGH DWGAMVAWHL CLFRPDRVRA AVVLGIPYFP RGPRPMTDSF AKLGDGFYIN QFQEPGRAER AFARYDVATV LKKFYALKID EMIAPPGVEI
201: IDFLQAPSSP IPWMTDEELG RYAEKFEKTG FTGPLNYYRM LETNWRLTAP WSGSKITVPA KFILSKNDVG LQSFGTEKYV KSGALKENVP DLEISIIEGH
301: HFVQQEEAGT VNSEILSFLG KFPSEGGSA
101: QLTKVFVVGH DWGAMVAWHL CLFRPDRVRA AVVLGIPYFP RGPRPMTDSF AKLGDGFYIN QFQEPGRAER AFARYDVATV LKKFYALKID EMIAPPGVEI
201: IDFLQAPSSP IPWMTDEELG RYAEKFEKTG FTGPLNYYRM LETNWRLTAP WSGSKITVPA KFILSKNDVG LQSFGTEKYV KSGALKENVP DLEISIIEGH
301: HFVQQEEAGT VNSEILSFLG KFPSEGGSA
001: MTSSVREKKI KTNGIWLNVA EKGDEEGPLV LLLHGFPETW YSWRHQIDFL SSHGYHVVAP DLRGYGDSDS LPSHESYTVS HLVADVIGLL DHYGTTQAFV
101: AGHDWGAIIG WCLCLFRPDR VKGFISLSVP YFPRDPKLKP SDFFKIFGDG LYITQFQKPG RAEAAFAKHD CLSVMKKFLL ITRTDYLVAP PDTEIIDHLE
201: IPSTIPDWIT EEEIQVYAEK FQRSGFTGPL NYYRSMDMNW EILAPWQDSK IVVPTKFIAG DKDIGYEGPN GTMEYVKGEV FKIVVPNLEI VVIEGGHHFI
301: QQEKSEQVSQ EILSFLNKLS KTE
101: AGHDWGAIIG WCLCLFRPDR VKGFISLSVP YFPRDPKLKP SDFFKIFGDG LYITQFQKPG RAEAAFAKHD CLSVMKKFLL ITRTDYLVAP PDTEIIDHLE
201: IPSTIPDWIT EEEIQVYAEK FQRSGFTGPL NYYRSMDMNW EILAPWQDSK IVVPTKFIAG DKDIGYEGPN GTMEYVKGEV FKIVVPNLEI VVIEGGHHFI
301: QQEKSEQVSQ EILSFLNKLS KTE
Arabidopsis Description
AT3g51000/F24M12_40 [Source:UniProtKB/TrEMBL;Acc:Q9SD45]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.