CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77049
CDX77050
CDX77051
CDY48181

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51000.1	CDX77049	AT2G26740.1	21798944
AT3G51000.1	CDX77050	AT2G26740.1	21798944
AT3G51000.1	CDX77051	AT2G26740.1	21798944
AT3G51000.1	CDY48181	AT2G26740.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28994	Canola	mitochondrion	98.7	31.48
OQU79732	Sorghum	cytosol	0.43	0.31
EES17493	Sorghum	cytosol	0.43	0.31
TraesCS5D01G065000.1	Wheat	cytosol	0.43	0.31
HORVU5Hr1G012890.5	Barley	plastid	0.43	0.31
Zm00001d031203_P001	Maize	cytosol	0.43	0.3
TraesCS5A01G053600.1	Wheat	cytosol	0.43	0.3
Zm00001d031204_P003	Maize	cytosol	0.43	0.29
CDY65635	Canola	cytosol	0.0	0.0
CDY50394	Canola	peroxisome	0.0	0.0
CDY65636	Canola	peroxisome	0.0	0.0
GSMUA_Achr5P19790_001	Banana	peroxisome	0.0	0.0
HORVU6Hr1G005400.4	Barley	cytosol, peroxisome, plastid	0.0	0.0
KRH08141	Soybean	cytosol	0.0	0.0
KRH69845	Soybean	cytosol	0.0	0.0
Os12t0636400-01	Rice	cytosol, peroxisome	0.0	0.0
TraesCS6A01G029300.1	Wheat	cytosol	0.0	0.0
VIT_04s0023g02610.t01	Wine grape	golgi, mitochondrion, peroxisome	0.0	0.0
Zm00001d041217_P002	Maize	extracellular	0.0	0.0
CDY05187	Canola	cytosol	0.0	0.0
CDX73754	Canola	cytosol, peroxisome, plastid	0.0	0.0
CDX77049	Canola	peroxisome	0.0	0.0
CDX77050	Canola	peroxisome	0.0	0.0
CDX77051	Canola	cytosol	0.0	0.0
CDX77971	Canola	cytosol, peroxisome, plastid	0.0	0.0
CDX90550	Canola	cytosol	0.0	0.0
CDX90553	Canola	cytosol	0.0	0.0
CDX90672	Canola	mitochondrion	0.0	0.0
CDY57860	Canola	cytosol	0.0	0.0
CDY09722	Canola	cytosol	0.0	0.0
CDY09727	Canola	cytosol	0.0	0.0
CDY26530	Canola	peroxisome	0.0	0.0
CDY27752	Canola	cytosol	0.0	0.0
CDY33304	Canola	peroxisome	0.0	0.0
CDY48181	Canola	peroxisome	0.0	0.0
CDY50393	Canola	cytosol	0.0	0.0
AT3G51000.1	Thale cress	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX90673	EnsemblPlantsGene:GSBRNA2T00151328001	Gene3D:3.40.30.10	GO:A0A078DU30	GO:GO:0005575	GO:GO:0005623
GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	PANTHER:PTHR21148	PANTHER:PTHR21148:SF40	PFAM:PF00085	ProteinID:CDX90673	ProteinID:CDX90673.1
SEG:seg	SUPFAM:SSF52833	UniParc:UPI0004EE59A5	MapMan:20.1.2.3	:	:

Description

BnaA03g41080D

Coordinates

chrLK031863:+:1429163..1430975

Molecular Weight (calculated)

26229.0 Da

IEP (calculated)

5.473

GRAVY (calculated)

-0.656

Length

230 amino acids

Sequence
(BLAST)

001: MDPDAVKSTL SNLAFGNVLA AAARDYKKEV LANEKAQSSN PVNEEVDLDE LMDDPELEKL HADRIAALKR EVEKREAFKR QGHGEYREVS EGDFLGEVTR
101: SQNVICHFYH KEFYRCKIMD KHLKTLAPRH VDTKFIRVDA ENAPFFVTKL AIKTLPCVLL FSKGVAIDRL VGFQDLGTKD DFTTTKLENV LIKKGMLSKK
201: KKEEDDEDAE YQESIRRSVR SSENLDSDSD

Best Arabidopsis Sequence Match ( AT3G50960.1 )
(BLAST)

001: MDPDAVKSTL SNLAFGNVMA AAARNYQKEV LANEKAQGSN PVNEEVDLDE LMDDPELERL HADRIAALKR EVEKRESFKR QGHGEYREVS EGDFLGEVTR
101: SEKVICHFYH KEFYRCKIMD KHLKTLAPRH VDTKFIKVDA ENAPFFVTKL AIKTLPCVVL FSKGVAMDRL VGFQDLGTKD DFTTNKLENV LLKKGMLSKK
201: KKEEDDEDAE YQESIRRSVR SSENLDSDSD

Arabidopsis Description

PLP3AThioredoxin domain-containing protein PLP3A [Source:UniProtKB/Swiss-Prot;Acc:Q6NPL9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.