Factsheet for GSMUA_Achr6P24950_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
EpiLoc:	peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G118400.1	Wheat	mitochondrion	22.7	80.98
Os03t0429800-01	Rice	cytosol	75.53	68.3
OQU92302	Sorghum	cytosol	75.53	68.2
Zm00001d029626_P005	Maize	cytosol	75.04	67.81
TraesCS1A01G183800.1	Wheat	cytosol	74.72	67.57
HORVU1Hr1G049690.1	Barley	cytosol	74.72	67.57
TraesCS1B01G205300.1	Wheat	cytosol	74.64	67.49
VIT_06s0004g02030.t01	Wine grape	cytosol	74.56	67.42
TraesCS1D01G192900.1	Wheat	cytosol	74.31	67.2
TraesCS6D01G078500.1	Wheat	cytosol	74.15	66.91
KRH23139	Soybean	cytosol	73.02	66.57
KRH10197	Soybean	cytosol	69.31	66.36
Solyc11g065920.1.1	Tomato	cytosol, extracellular, unclear	72.94	66.11
AT4G34890.1	Thale cress	cytosol	72.13	65.61
CDX69096	Canola	cytosol	71.41	65.34
CDX75472	Canola	cytosol	71.57	65.29
Bra011570.1-P	Field mustard	cytosol	71.57	65.29
CDY22032	Canola	cytosol	71.24	65.14
CDY65337	Canola	cytosol	70.6	64.55
AT4G34900.1	Thale cress	cytosol	70.27	64.3
Bra036289.1-P	Field mustard	cytosol	69.39	63.39
Solyc11g065930.1.1	Tomato	cytosol, unclear	68.66	62.64
TraesCS6B01G118300.1	Wheat	peroxisome	38.69	57.57
GSMUA_Achr9P10490_001	Banana	cytosol, peroxisome, plastid	31.1	29.1
GSMUA_Achr9P10470_001	Banana	peroxisome	30.86	29.07

Protein Annotations

MapMan:10.1.2	InterPro:2Fe-2S-bd	InterPro:2Fe-2S-bd_dom_sf	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS
Gene3D:3.30.365.10	MapMan:6.1.4.5	InterPro:AldOxase/xan_DH_Mopterin-bd	InterPro:AldOxase/xan_DH_Mopterin-bd_sf	InterPro:Ald_Oxase/Xan_DH_a/b	InterPro:Ald_Oxase/Xan_DH_a/b_sf
InterPro:Ald_Oxase/xanthine_DH	InterPro:CO_DH_flav_C	InterPro:CO_DH_flav_C_dom_sf	ncoils:Coil	InterPro:FAD-bd_2-like_sf	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016491	GO:GO:0016614	GO:GO:0022900
GO:GO:0046872	GO:GO:0050660	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr6G24950_001
EnsemblPlants:GSMUA_Achr6P24950_001	EnsemblPlants:GSMUA_Achr6T24950_001	InterPro:IPR001041	UniProt:M0T9Z1	InterPro:Mopterin_DH_FAD-bd	PFAM:PF00111
PFAM:PF00941	PFAM:PF01315	PFAM:PF01799	PFAM:PF02738	PFAM:PF03450	PIRSF:PIRSF000127
ScanProsite:PS00197	PFscan:PS51085	PANTHER:PTHR11908	PANTHER:PTHR11908:SF100	SMART:SM01008	SMART:SM01092
SUPFAM:SSF47741	SUPFAM:SSF54292	SUPFAM:SSF54665	SUPFAM:SSF55447	SUPFAM:SSF56003	SUPFAM:SSF56176
UniParc:UPI000296E438	SEG:seg	:	:	:	:

Description

Putative Xanthine dehydrogenase [Source:GMGC_GENE;Acc:GSMUA_Achr6G24950_001]

Coordinates

chr6:+:25801914..25835164

Molecular Weight (calculated)

136863.0 Da

IEP (calculated)

6.832

GRAVY (calculated)

-0.060

Length

1238 amino acids

Sequence
(BLAST)

0001: MGSLTKAQDV VAEEEWSREV VVYVNGVRRV LPDGLAHLTV LQYLRDVGLT GAKLGCGEGG CGACTVMISY FDEQSKRSVH HAINACLAPL YSVEGMHVIT
0101: VEGIGNSLRG LHPIQESLAQ AHGSQCGFCT PGFVMSMYAL LRSSGEPPTE EQIEETLAGN LCRCTGYRPI LDAFRVFAKT DDLLYAKTSL ESTSAGDLYF
0201: EKELIFPPEL ILRKNMPLCL HGFGGVKWYR PLKLQHVLDL KSRYPDAKLV VGNTEVGIET KFKNSQLTLL QQFLRKVIMQ HPVEETSSCK AILRQLKWFA
0301: GNQIKNVASV GNVRTIPAKE FFLGYRKVDL ANDEVLLSVF LPWTRSLEFV KEFKQAHRRE DDIALVNAGM RVLLKQDCGI WEVSDVSIIY GGVAPVSLIA
0401: SKTQSFLRKK KWDNNLLQGA LKILQEDIVL TEDAPGGMIE FRKSLILSFF FKFFSWVTNE IGIQSYDLTR HETAVGQPAI HLSSKLQVTG EAEYIDDIPH
0501: PPQALHAALI LSKRAHARIL SIDDVMAKSS PGFVGLFLYR DIPGSNKLGV ILKDEELFAS DIVTCVGQIV GVVVADTHDN AKIASNKVHI EYEDLPAILS
0601: IREAVRSCSF YPNTERWLMK GDVELCFKSG ECDKIIEGEV QVGGQEHFYL EPNGSLIWPV DGGNEVHMVS STQCPQYHQE CVAHVLGLPL SKVVCKTKRI
0701: GGGFGGKESR SAFIAAAASV PSYLLRRPVK IILDRDTDMM ITGQRHSFLG KYKVGFTTAG EVLALDLQLY NNGGNSLDLS CSVLERAMFH SDNVYDVPNM
0801: RVRGQVCYTN FPSNTAFRGF GGPQGMLIAE NWIQRIAMEL QRSPEEIREL NFHNEGSMLH YGMILQSCTL TQLWDELKTS CDFVKARANV NHFNLHNRWR
0901: KRGVAMVPTK FGISFTTKHM NQAGALVQVY TDGTVLVTHG GVEMGQGLHT KVAQIAASAF NIPLSSVFIS DTSTDKVPNA SPTAASASSD LYGAAVLDAC
1001: EQIKARMQCI ATTKTHSSFA ELVRACYLER IDLSAHGFYI TPNIGFDWKV GKGTPFNYFT YGAAFAEVEI DTLTGDFYTR EADIIMDLGH SLNPAIDVGQ
1101: IEGAFVQGLG WIALEELKWG DADHKWIRPG HLYTSGPGTY KIPTANDIPV KFKVSLLKGV QNPKAIHSSK AVGEPPFFLA SAVLFAIKDA VVAARAEEGY
1201: HDWFPLDNPA TPERIRMACI DDFTKQVASH NFHPKLSV

Best Arabidopsis Sequence Match ( AT4G34890.1 )
(BLAST)

0001: MGSLKKDGEI GDEFTEALLY VNGVRRVLPD GLAHMTLLEY LRDLGLTGTK LGCGEGGCGA CTVMVSSYDR KSKTSVHYAV NACLAPLYSV EGMHVISIEG
0101: LGHRKLGLHP VQESLASSHG SQCGFCTPGF IMSMYSLLRS SKNSPSEEEI EECLAGNLCR CTGYRPIVDA FRVFAKSDDA LYCGVSSLSL QDGSTICPST
0201: GKPCSCGSKT TNEVASCNED RFQSISYSDI DGAKYTDKEL IFPPELLLRK LTPLKLRGNG GITWYRPVCL QNLLELKANY PDAKLLVGNT EVGIEMRLKR
0301: LQYQVLISVA QVPELNALNV NDNGIEVGSA LRLSELLRLF RKIVKERPAH ETSACKAFIE QLKWFAGTQI RNVACIGGNI CTASPISDLN PLWMASRAEF
0401: RITNCNGDVR SIPAKDFFLG YRKVDMGSNE ILLSVFLPWT RPLEYVKEFK QAHRRDDDIA IVNGGMRVFL EDKGQQLFVS DASIAYGGVA PLSLCARKTE
0501: EFLIGKNWNK DLLQDALKVI QSDVVIKEDA PGGMVEFRKS LTLSFFFKFF LWVSHNVNNA NSAIETFPPS HMSAVQPVPR LSRIGKQDYE TVKQGTSVGS
0601: SEVHLSARMQ VTGEAEYTDD TPVPPNTLHA AFVLSKVPHA RILSIDDSAA KSSSGFVGLF LAKDIPGDNM IGPIVPDEEL FATDVVTCVG QVIGVVVADT
0701: HENAKTAAGK VDVRYEELPA ILSIKEAINA KSFHPNTEKR LRKGDVELCF QSGQCDRVIE GEVQMGGQEH FYLEPNGSLV WTVDGGSEVH MISSTQAPQK
0801: HQKYVSHVLG LPMSKVVCKT KRIGGGFGGK ETRSAFIAAA ASVPSYLLNR PVKLILDRDV DMMITGHRHS FLGKYKVGFT NEGKILALDL EIYNNGGNSL
0901: DLSLSVLERA MFHSDNVYEI PHVRIVGNVC FTNFPSNTAF RGFGGPQGML ITENWIQRIA AELNKSPEEI KEMNFQVEGS VTHYCQTLQH CTLHQLWKEL
1001: KVSCNFLKAR READEFNSHN RWKKRGVAMV PTKFGISFTT KFMNQAGALV HVYTDGTVLV THGGVEMGQG LHTKVAQVAA SAFNIPLSSV FVSETSTDKV
1101: PNASPTAASA SSDMYGAAVL DACEQIIARM EPVASKHNFN TFTELVSACY FQRIDLSAHG FHIVPDLGFD WISGKGNAFR YYTYGAAFAE VEIDTLTGDF
1201: HTRAADIMLD LGYSLNPAID VGQIEGAFVQ GLGWVALEEL KWGDAAHKWI KPGSLLTCGP GNYKIPSIND MPFNLNVSLL KGNPNTKAIH SSKAVGEPPF
1301: FLASSVFFAI KEAIKAARTE VGLTDWFPLE SPATPERIRM ACFDEFSAPF VNSDFYPNLS V

Arabidopsis Description

XDH1Xanthine dehydrogenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUQ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.