Factsheet for Solyc11g065920.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, extracellular, cytosol

Predictor Summary:

cytosol 4
peroxisome 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g065930.1.1	Tomato	cytosol, unclear	82.5	83.05
VIT_06s0004g02030.t01	Wine grape	cytosol	78.4	78.23
TraesCS6B01G118400.1	Wheat	mitochondrion	19.62	77.23
KRH23139	Soybean	cytosol	76.65	77.1
KRH10197	Soybean	cytosol	72.18	76.26
AT4G34890.1	Thale cress	cytosol	73.94	74.21
CDX69096	Canola	cytosol	73.35	74.06
Bra011570.1-P	Field mustard	cytosol	73.5	73.99
CDX75472	Canola	cytosol	73.28	73.77
CDY22032	Canola	cytosol	72.33	72.97
AT4G34900.1	Thale cress	cytosol	72.25	72.95
GSMUA_Achr6P24950_001	Banana	cytosol	66.11	72.94
CDY65337	Canola	cytosol	72.04	72.67
Bra036289.1-P	Field mustard	cytosol	70.42	71.0
TraesCS1D01G192900.1	Wheat	cytosol	70.06	69.91
TraesCS1A01G183800.1	Wheat	cytosol	70.06	69.91
HORVU1Hr1G049690.1	Barley	cytosol	69.99	69.83
Os03t0429800-01	Rice	cytosol	69.99	69.83
TraesCS1B01G205300.1	Wheat	cytosol	69.91	69.76
OQU92302	Sorghum	cytosol	69.69	69.44
Zm00001d029626_P005	Maize	cytosol	69.4	69.2
TraesCS6D01G078500.1	Wheat	cytosol	68.52	68.22
TraesCS6B01G118300.1	Wheat	peroxisome	38.21	62.74
Solyc11g071610.1.1	Tomato	cytosol, nucleus, peroxisome	29.5	30.72
Solyc01g009230.2.1	Tomato	cytosol	30.53	30.64
Solyc11g071600.1.1	Tomato	cytosol, nucleus, peroxisome	30.38	30.43
Solyc11g071620.1.1	Tomato	cytosol	29.87	29.98
Solyc01g088170.2.1	Tomato	cytosol, nucleus, peroxisome	29.8	29.77
Solyc01g088230.2.1	Tomato	peroxisome	6.15	29.68
Solyc11g071590.1.1	Tomato	peroxisome, plastid	2.34	28.32
Solyc11g071580.1.1	Tomato	cytosol	25.77	28.27
Solyc01g088220.2.1	Tomato	cytosol	1.32	24.66
Solyc01g088200.2.1	Tomato	cytosol	9.15	24.65

Protein Annotations

MapMan:10.1.2	InterPro:2Fe-2S-bd	InterPro:2Fe-2S-bd_dom_sf	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS
Gene3D:3.30.365.10	MapMan:6.1.4.5	InterPro:AldOxase/xan_DH_Mopterin-bd	InterPro:AldOxase/xan_DH_Mopterin-bd_sf	InterPro:Ald_Oxase/Xan_DH_a/b	InterPro:Ald_Oxase/Xan_DH_a/b_sf
InterPro:Ald_Oxase/xanthine_DH	InterPro:CO_DH_flav_C	InterPro:CO_DH_flav_C_dom_sf	ncoils:Coil	InterPro:FAD-bd_2	InterPro:FAD-bd_2-like_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004854	GO:GO:0005488	GO:GO:0005506
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006091
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009056	GO:GO:0009115
GO:GO:0009987	GO:GO:0016491	GO:GO:0016614	GO:GO:0016903	GO:GO:0022900	GO:GO:0046872
GO:GO:0050660	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114	GO:GO:0071949	InterPro:IPR001041
InterPro:IPR016166	UniProt:K4D9K1	InterPro:Mopterin_DH_FAD-bd	PFAM:PF00111	PFAM:PF00941	PFAM:PF01315
PFAM:PF01799	PFAM:PF02738	PFAM:PF03450	PIRSF:PIRSF000127	ScanProsite:PS00197	PFscan:PS51085
PFscan:PS51387	PANTHER:PTHR11908	PANTHER:PTHR11908:SF100	SMART:SM01008	SMART:SM01092	SUPFAM:SSF47741
SUPFAM:SSF54292	SUPFAM:SSF54665	SUPFAM:SSF55447	SUPFAM:SSF56003	SUPFAM:SSF56176	EnsemblPlantsGene:Solyc11g065920.1
EnsemblPlants:Solyc11g065920.1.1	UniParc:UPI0002769C95	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:-:51493585..51507636

Molecular Weight (calculated)

150629.0 Da

IEP (calculated)

6.679

GRAVY (calculated)

-0.136

Length

1366 amino acids

Sequence
(BLAST)

0001: MGSLMKEETI EEESKEAILY VNGIRRVLPD GLAHLTLLEY LREIGLTGTK LGCGEGGCGA CTVMVSFFDQ NLKKCVHHAV NACLAPLYSV EGMHVITVEG
0101: IGNRKAGLHP IQESLARSHG SQCGFCTPGF VMSMYALLRS SKEQPTEEQI EESLAGNLCR CTGYRPIVDA FRVFAKTSNA LYTNTSLQDI NAGEFICPST
0201: GKPCSCGPKA ENSEETVKHN LSNDCGWKPF SYNETDGTTY TSKELIFPPE LLLRKLTYLS LSGSNGRKWY RPIKLQHLLD LKARFPDARL VVGNTEVGIE
0301: VRLKGIHYPV LISVAHVPEL NYIRFEDDGL EIGAGVKLSQ LVDVLKKVRN NRPEYETSSC RALIEQIKWF AGTQIRNVAS VGGNICTASP ISDLNPLWMA
0401: TGAKFQIIDC KGNVRTCLAK DFFQGYRKVD LTSSEILLSV SLPWNKPFEF VKEFKQSHRR DDDIAIVNAG MRVCLEEKDK KWVVSDALIV YGGVAPLSFA
0501: ASKTSDFLIG KSWNKELLQD SLKILEKEIV LKEDAPGGMV EFRKSLTFSF FFKFFLWVCH QMDGQTLFLE KVPASHISAV DSSLRPSVSS IQDFEIRRHG
0601: TSVGSPEVHI SSRLQVSGEA EYTDDAPMPP NSLHAALILS KKPHARILSI DDSGARSSPG FAGIFLAKDV PGNNMIGPVV HDEELFASEF VTSVGQVIGV
0701: VVADTHENAK LAARKVHVEY EELPAVLSIE DAIQANSYHP NTERCMTKGD VEQCFRSGQC DSIIEGEVRV GGQEHFYLEP HGTFLWTVDS GNEVHMISST
0801: QAPQKHQKYV SHVLGLPMSK VVCKTKRIGG GFGGKETRSA MLAAAVAVPS YLLDRPVKII LDRDIDMMIM GQRHSFLGKY KVGFTNAGKV LALDLHIYNN
0901: AGNSLDLSTA VLERSMFHSH NVYEIPNVRV NGKACFTNFP SNTAFRGFGG PQGMLIAENW IERIAVEVNK SPEEIKEMNF ISEGSVLHYG QKVEDCTLGR
1001: LWDELKSSCD FINAQNEVEI FNRHNRWKKR GIAMVPTKFG IAFTFKSMNQ AGALVQVYTD GTVLVTHGGV EMGQGLHTKV AQIAASSFNI PLSAVFISDT
1101: STDKVPNASP TAASASSDMY GAAVLDACEQ IKARMEPIAS KSNFSSFEEL VSACYFERID LSAHGFYITP DIDFDWKSGK GSPFRYFTYG AAFSEVEIDT
1201: LTGDFHTRRA DVILDLGFSL NPAIDVGQIE GAFLQGLGWV ALEELKWGDK AHKWIPPGCL LTCGPGNYKL PSLNDMPFKF NVSLLKNAPN TKAIHSSKAV
1301: GEPPFFLASA VFFAIKNAIK SARMEAGYND WFPLDNPATP ERIRMACTDE FTKLLVNSDF RPKLSV

Best Arabidopsis Sequence Match ( AT4G34890.1 )
(BLAST)

0001: MGSLKKDGEI GDEFTEALLY VNGVRRVLPD GLAHMTLLEY LRDLGLTGTK LGCGEGGCGA CTVMVSSYDR KSKTSVHYAV NACLAPLYSV EGMHVISIEG
0101: LGHRKLGLHP VQESLASSHG SQCGFCTPGF IMSMYSLLRS SKNSPSEEEI EECLAGNLCR CTGYRPIVDA FRVFAKSDDA LYCGVSSLSL QDGSTICPST
0201: GKPCSCGSKT TNEVASCNED RFQSISYSDI DGAKYTDKEL IFPPELLLRK LTPLKLRGNG GITWYRPVCL QNLLELKANY PDAKLLVGNT EVGIEMRLKR
0301: LQYQVLISVA QVPELNALNV NDNGIEVGSA LRLSELLRLF RKIVKERPAH ETSACKAFIE QLKWFAGTQI RNVACIGGNI CTASPISDLN PLWMASRAEF
0401: RITNCNGDVR SIPAKDFFLG YRKVDMGSNE ILLSVFLPWT RPLEYVKEFK QAHRRDDDIA IVNGGMRVFL EDKGQQLFVS DASIAYGGVA PLSLCARKTE
0501: EFLIGKNWNK DLLQDALKVI QSDVVIKEDA PGGMVEFRKS LTLSFFFKFF LWVSHNVNNA NSAIETFPPS HMSAVQPVPR LSRIGKQDYE TVKQGTSVGS
0601: SEVHLSARMQ VTGEAEYTDD TPVPPNTLHA AFVLSKVPHA RILSIDDSAA KSSSGFVGLF LAKDIPGDNM IGPIVPDEEL FATDVVTCVG QVIGVVVADT
0701: HENAKTAAGK VDVRYEELPA ILSIKEAINA KSFHPNTEKR LRKGDVELCF QSGQCDRVIE GEVQMGGQEH FYLEPNGSLV WTVDGGSEVH MISSTQAPQK
0801: HQKYVSHVLG LPMSKVVCKT KRIGGGFGGK ETRSAFIAAA ASVPSYLLNR PVKLILDRDV DMMITGHRHS FLGKYKVGFT NEGKILALDL EIYNNGGNSL
0901: DLSLSVLERA MFHSDNVYEI PHVRIVGNVC FTNFPSNTAF RGFGGPQGML ITENWIQRIA AELNKSPEEI KEMNFQVEGS VTHYCQTLQH CTLHQLWKEL
1001: KVSCNFLKAR READEFNSHN RWKKRGVAMV PTKFGISFTT KFMNQAGALV HVYTDGTVLV THGGVEMGQG LHTKVAQVAA SAFNIPLSSV FVSETSTDKV
1101: PNASPTAASA SSDMYGAAVL DACEQIIARM EPVASKHNFN TFTELVSACY FQRIDLSAHG FHIVPDLGFD WISGKGNAFR YYTYGAAFAE VEIDTLTGDF
1201: HTRAADIMLD LGYSLNPAID VGQIEGAFVQ GLGWVALEEL KWGDAAHKWI KPGSLLTCGP GNYKIPSIND MPFNLNVSLL KGNPNTKAIH SSKAVGEPPF
1301: FLASSVFFAI KEAIKAARTE VGLTDWFPLE SPATPERIRM ACFDEFSAPF VNSDFYPNLS V

Arabidopsis Description

XDH1Xanthine dehydrogenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUQ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.