Factsheet for Solyc11g065930.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

cytosol 4
peroxisome 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g065920.1.1	Tomato	cytosol, extracellular, unclear	83.05	82.5
TraesCS6B01G118400.1	Wheat	mitochondrion	19.23	75.22
VIT_06s0004g02030.t01	Wine grape	cytosol	72.29	71.66
KRH23139	Soybean	cytosol	71.19	71.13
KRH10197	Soybean	cytosol	67.43	70.77
CDX69096	Canola	cytosol	68.83	69.03
Bra011570.1-P	Field mustard	cytosol	68.98	68.98
CDX75472	Canola	cytosol	68.83	68.83
AT4G34890.1	Thale cress	cytosol	68.9	68.7
GSMUA_Achr6P24950_001	Banana	cytosol	62.64	68.66
AT4G34900.1	Thale cress	cytosol	68.17	68.37
CDY22032	Canola	cytosol	67.21	67.36
CDY65337	Canola	cytosol	67.13	67.28
Bra036289.1-P	Field mustard	cytosol	66.1	66.2
TraesCS1D01G192900.1	Wheat	cytosol	65.29	64.72
TraesCS1B01G205300.1	Wheat	cytosol	65.22	64.65
TraesCS1A01G183800.1	Wheat	cytosol	65.22	64.65
HORVU1Hr1G049690.1	Barley	cytosol	65.14	64.57
Os03t0429800-01	Rice	cytosol	65.14	64.57
Zm00001d029626_P005	Maize	cytosol	64.78	64.16
OQU92302	Sorghum	cytosol	64.78	64.11
TraesCS6D01G078500.1	Wheat	cytosol	64.63	63.92
TraesCS6B01G118300.1	Wheat	peroxisome	37.21	60.7
Solyc11g071590.1.1	Tomato	peroxisome, plastid	2.51	30.09
Solyc01g088230.2.1	Tomato	peroxisome	6.19	29.68
Solyc11g071610.1.1	Tomato	cytosol, nucleus, peroxisome	27.93	28.89
Solyc01g009230.2.1	Tomato	cytosol	28.89	28.8
Solyc11g071620.1.1	Tomato	cytosol	28.67	28.58
Solyc11g071600.1.1	Tomato	cytosol, nucleus, peroxisome	28.59	28.45
Solyc01g088170.2.1	Tomato	cytosol, nucleus, peroxisome	28.3	28.09
Solyc11g071580.1.1	Tomato	cytosol	24.32	26.51
Solyc01g088220.2.1	Tomato	cytosol	1.4	26.03
Solyc01g088200.2.1	Tomato	cytosol	9.06	24.26

Protein Annotations

MapMan:10.1.2	InterPro:2Fe-2S-bd	InterPro:2Fe-2S-bd_dom_sf	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe2S_fd_BS	Gene3D:3.30.365.10
MapMan:6.1.4.5	InterPro:AldOxase/xan_DH_Mopterin-bd	InterPro:AldOxase/xan_DH_Mopterin-bd_sf	InterPro:Ald_Oxase/Xan_DH_a/b	InterPro:Ald_Oxase/Xan_DH_a/b_sf	InterPro:Ald_Oxase/xanthine_DH
InterPro:CO_DH_flav_C	InterPro:CO_DH_flav_C_dom_sf	ncoils:Coil	InterPro:FAD-bd_2	InterPro:FAD-bd_2-like_sf	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004854	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006091	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009056	GO:GO:0009115	GO:GO:0009987
GO:GO:0016491	GO:GO:0016614	GO:GO:0016903	GO:GO:0022900	GO:GO:0046872	GO:GO:0050660
GO:GO:0051536	GO:GO:0051537	GO:GO:0055114	GO:GO:0071949	InterPro:IPR016166	UniProt:K4D9K2
InterPro:Mopterin_DH_FAD-bd	PFAM:PF00941	PFAM:PF01315	PFAM:PF01799	PFAM:PF02738	PFAM:PF03450
PIRSF:PIRSF000127	ScanProsite:PS00197	PFscan:PS51387	PANTHER:PTHR11908	PANTHER:PTHR11908:SF100	SMART:SM01008
SMART:SM01092	SUPFAM:SSF47741	SUPFAM:SSF54292	SUPFAM:SSF54665	SUPFAM:SSF55447	SUPFAM:SSF56003
SUPFAM:SSF56176	EnsemblPlantsGene:Solyc11g065930.1	EnsemblPlants:Solyc11g065930.1.1	UniParc:UPI0002769C96	SEG:seg	:

Description

No Description!

Coordinates

chr11:-:51514472..51526784

Molecular Weight (calculated)

148886.0 Da

IEP (calculated)

6.945

GRAVY (calculated)

-0.129

Length

1357 amino acids

Sequence
(BLAST)

0001: MRLYDEHTPP GMKAQIIQLE HAPARDGHAN CTGEIGLTGT KLGCGQGGCG ACTVMVSYFD QNSKKCVHHA INACLAPLYS VEGMHVITVE GIGSNKAGLH
0101: PIQESLARLH SSQCGFCTPG FVMSMYALLR SSKEPPSEEQ IEENLAGNLC RCTGYRPIIE AFRVFAKTNN ALYTKTSLQG ISTGEFICPS TGKPCSCGPQ
0201: AGSSEKESIE KNLRNGCGWK PFHNETDGTT YTSKELIFPP ELLLRKLTYL SLSGSNGLKW HRPLKLQHVL DLKARFPDAK LVVGNTEVGI EVRLKRILCP
0301: VLISVAHVPE LNHIRVEDSS LEIGAAVKLS LLVDVLKKVR DERPEYETSS CRALIDQIKW FGGTQIRNVA SVGGNICTAS PISDLNPLWI AAGAKFCIMD
0401: CEGNVRTCLA KNFFKGDSKV DLGSSEILLS VSLPWNRPFE FVKEFKQSHR RDDDFAIVNA GMRVCLEEKH RKWVVSDALI VYGGVAPFSF AASKTSHFLV
0501: GKNWNKELLH GALKILGEEI ALKEDAPGGM VEFRKSLTFS FFFKFFLWVC HQMDGQPSFI EKVPASHISA VNSSLQPYIS SVQDFEIKKQ GNSVGSPEAH
0601: LSSRLQVSGE AEYLDDGSTP PNCLHAALVL SEKPHARILS IDDSGAKSST GFAGIFLAKD VPSNNKIGAI VADEEVFATE FVTCVGQVIG VVVADTHENA
0701: KLAARKVQVE YEELPAVFSI EDAIQANSYH PNAERRLNMG DVEQCFQSGQ CDHIIEGEVR VGGQEHFYLE PQGTLIWTVD SGNEVHMLSS TQAPQKHQEY
0801: VSHVLGLPMS KVVCKTKRIG GGFGGKESRS AFLAAAVAVP SYLLDRPVKL ILDRDIDMKI TGQRHSFFGK YKVGFTNEGK VLAFDLRIYN NGGNSLDLSL
0901: TVLEGAMLQA NNAYDIPNMR VYGNVCFTNL PSNTAFRGFG APQVMLMVEN WIERIGLKVN KIPEEIREMN FVSKGSILYY GQKVEDCNLG RVWNELKSSC
1001: DFINAQKEVE NFNRHNRWKK RGIAMVPTNL GISFTTKFVN QAGALIQVYT DGTVLVTHGG VEMGQGLHTK LAQIAASSFN IPLNAVFISE TSTDKVPNAS
1101: ATAASVSSDL YGAAVLDACE QLKARMEPIA SKNNFSSFAE LVSACYMERI DLSAHGFFVT PDIGFDWKSG KGNVFRYYTS GASFSEVEID TLTGDFHTRR
1201: ADLLVDVGFS LNPAIDVGQV EGGFLQGLGW FALEELKWGD KAHKWISPGY LFTSGPGSYK IPTLNDVPSK FNVSLLKNAP NAKAIHFSKA VGEPPFFLAS
1301: SVFFAIKNAI KSARMEAGYN DWFPLDNPAT PERIRMACTD EFTRLVVDSD FRPKLSV

Best Arabidopsis Sequence Match ( AT4G34890.1 )
(BLAST)

0001: MGSLKKDGEI GDEFTEALLY VNGVRRVLPD GLAHMTLLEY LRDLGLTGTK LGCGEGGCGA CTVMVSSYDR KSKTSVHYAV NACLAPLYSV EGMHVISIEG
0101: LGHRKLGLHP VQESLASSHG SQCGFCTPGF IMSMYSLLRS SKNSPSEEEI EECLAGNLCR CTGYRPIVDA FRVFAKSDDA LYCGVSSLSL QDGSTICPST
0201: GKPCSCGSKT TNEVASCNED RFQSISYSDI DGAKYTDKEL IFPPELLLRK LTPLKLRGNG GITWYRPVCL QNLLELKANY PDAKLLVGNT EVGIEMRLKR
0301: LQYQVLISVA QVPELNALNV NDNGIEVGSA LRLSELLRLF RKIVKERPAH ETSACKAFIE QLKWFAGTQI RNVACIGGNI CTASPISDLN PLWMASRAEF
0401: RITNCNGDVR SIPAKDFFLG YRKVDMGSNE ILLSVFLPWT RPLEYVKEFK QAHRRDDDIA IVNGGMRVFL EDKGQQLFVS DASIAYGGVA PLSLCARKTE
0501: EFLIGKNWNK DLLQDALKVI QSDVVIKEDA PGGMVEFRKS LTLSFFFKFF LWVSHNVNNA NSAIETFPPS HMSAVQPVPR LSRIGKQDYE TVKQGTSVGS
0601: SEVHLSARMQ VTGEAEYTDD TPVPPNTLHA AFVLSKVPHA RILSIDDSAA KSSSGFVGLF LAKDIPGDNM IGPIVPDEEL FATDVVTCVG QVIGVVVADT
0701: HENAKTAAGK VDVRYEELPA ILSIKEAINA KSFHPNTEKR LRKGDVELCF QSGQCDRVIE GEVQMGGQEH FYLEPNGSLV WTVDGGSEVH MISSTQAPQK
0801: HQKYVSHVLG LPMSKVVCKT KRIGGGFGGK ETRSAFIAAA ASVPSYLLNR PVKLILDRDV DMMITGHRHS FLGKYKVGFT NEGKILALDL EIYNNGGNSL
0901: DLSLSVLERA MFHSDNVYEI PHVRIVGNVC FTNFPSNTAF RGFGGPQGML ITENWIQRIA AELNKSPEEI KEMNFQVEGS VTHYCQTLQH CTLHQLWKEL
1001: KVSCNFLKAR READEFNSHN RWKKRGVAMV PTKFGISFTT KFMNQAGALV HVYTDGTVLV THGGVEMGQG LHTKVAQVAA SAFNIPLSSV FVSETSTDKV
1101: PNASPTAASA SSDMYGAAVL DACEQIIARM EPVASKHNFN TFTELVSACY FQRIDLSAHG FHIVPDLGFD WISGKGNAFR YYTYGAAFAE VEIDTLTGDF
1201: HTRAADIMLD LGYSLNPAID VGQIEGAFVQ GLGWVALEEL KWGDAAHKWI KPGSLLTCGP GNYKIPSIND MPFNLNVSLL KGNPNTKAIH SSKAVGEPPF
1301: FLASSVFFAI KEAIKAARTE VGLTDWFPLE SPATPERIRM ACFDEFSAPF VNSDFYPNLS V

Arabidopsis Description

XDH1Xanthine dehydrogenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUQ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.