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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • plastid 2
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 4
  • golgi 4
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:nucleus, plastid, secretory
BaCelLo:plastid
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:nucleus
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:endoplasmic reticulum
 nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG91414 Soybean cytosol 54.01 55.32
KRH38655 Soybean cytosol 52.52 54.63
KRH09175 Soybean cytosol, plastid 51.34 54.4
VIT_16s0022g02300.t01 Wine grape cytosol 47.18 53.9
KRH09176 Soybean endoplasmic reticulum 40.36 53.33
VIT_16s0022g02430.t01 Wine grape cytosol 33.83 52.53
VIT_16s0100g00010.t01 Wine grape cytosol 48.96 50.61
VIT_16s0022g02440.t01 Wine grape cytosol 29.97 50.0
KRH38658 Soybean extracellular 20.77 50.0
AT5G62180.1 Thale cress cytosol 48.07 49.54
KRH38654 Soybean cytosol 42.43 49.14
Bra035904.1-P Field mustard cytosol 47.77 49.09
CDY16790 Canola cytosol 47.77 49.09
CDX87235 Canola cytosol, nucleus, plastid 36.8 48.06
Bra029278.1-P Field mustard cytosol 45.1 47.2
KRH48318 Soybean cytosol 41.25 43.57
KRH65207 Soybean cytosol 40.65 42.95
KRH48319 Soybean nucleus 42.43 42.81
PGSC0003DMT400071863 Potato cytosol 41.25 42.64
PGSC0003DMT400050566 Potato cytosol 41.25 42.64
Solyc06g035520.2.1 Tomato extracellular 40.95 42.33
PGSC0003DMT400048357 Potato cytosol 40.95 42.2
CDY30708 Canola cytosol 34.42 42.03
Bra029276.1-P Field mustard cytosol 32.94 40.66
KRH05152 Soybean cytosol 31.75 34.63
KRH25344 Soybean peroxisome 29.97 32.9
KRG96320 Soybean cytosol 30.56 31.79
KRH68056 Soybean cytosol 30.56 31.79
KRH56173 Soybean cytosol 30.86 31.61
KRH01780 Soybean cytosol 31.16 30.88
KRH32935 Soybean cytosol 29.97 30.42
KRH71756 Soybean cytosol 29.97 30.42
KRG90787 Soybean cytosol, mitochondrion 31.45 30.11
KRH46912 Soybean cytosol 32.05 29.83
KRH35975 Soybean cytosol 27.89 29.75
KRH38783 Soybean plastid 29.38 29.38
KRH33997 Soybean cytosol 29.97 29.36
KRH09282 Soybean extracellular 28.78 29.31
KRH71503 Soybean cytosol 29.38 28.95
KRH31953 Soybean cytosol 29.38 28.86
KRH09280 Soybean plastid 28.78 28.7
KRG92803 Soybean cytosol 29.08 28.49
KRH09281 Soybean plastid 28.49 28.4
KRH56206 Soybean cytosol 27.6 27.51
KRH67123 Soybean cytosol 28.19 27.46
KRH62746 Soybean cytosol 25.22 27.16
KRH20616 Soybean cytosol 21.66 26.74
KRH38784 Soybean plastid 27.6 25.76
Protein Annotations
EntrezGene:100777262Gene3D:3.40.50.1820MapMan:35.1InterPro:AB_hydrolaseInterPro:AB_hydrolase_3EMBL:ACUP02012684
EnsemblPlantsGene:GLYMA_20G153200GO:GO:0003674GO:GO:0003824GO:GO:0008150GO:GO:0008152GO:GO:0009056
GO:GO:0016787UniProt:I1NGN1InterPro:IPR029058EnsemblPlants:KRG91413ProteinID:KRG91413ProteinID:KRG91413.1
PFAM:PF07859PANTHER:PTHR23024PANTHER:PTHR23024:SF219MEROPS:S09.A14SUPFAM:SSF53474UniParc:UPI000233DE16
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr20:+:39212122..39213614
Molecular Weight (calculated)
37326.1 Da
IEP (calculated)
8.839
GRAVY (calculated)
-0.074
Length
337 amino acids
Sequence
(BLAST)
001: MSLKSVTVLT TYLIYASIVA KSAMDPYKAL NIILNPNGTL TRLSIPPQSP PSPDPTLPTA VLSKDLTINQ SKHTWARIYL PHKALDYSPN TNSKLPLIVF
101: YHGGGFLFYS ANSTYFHDFC VRMANDTQSV VVSVDYRLAP EHRLPAAYED SVEALHWIKS SNDPWLRHAD YSRCYLMGES AGGNIAYTAG LRAAAEVDQI
201: KPLKIKGLIL IQPFFGGTKR TPSEVRLAED QTLPLPITDL MWNLSLPVGV DRDYEYSNPT IKGGAKILDR IKALGWKVAV FGVEGDPLVD RERELVGLLQ
301: HKGVQVVGLF YQGGRHGIFV GDPSMSVKVF DLLKTLH
Best Arabidopsis Sequence Match ( AT5G62180.1 )
(BLAST)
001: MSEPSPIADP YAYLNIVNNP DGSITRDLSN FPCTAATPDP SPLNPAVSKD LPVNQLKSTW LRLYLPSSAV NEGNVSSQKL PIVVYYHGGG FILCSVDMQL
101: FHDFCSEVAR DLNAIVVSPS YRLAPEHRLP AAYDDGVEAL DWIKTSDDEW IKSHADFSNV FLMGTSAGGN LAYNVGLRSV DSVSDLSPLQ IRGLILHHPF
201: FGGEERSESE IRLMNDQVCP PIVTDVMWDL SLPVGVDRDH EYSNPTVGDG SEKLEKIGRL RWKVMMIGGE DDPMIDLQKD VAKLMKKKGV EVVEHYTGGH
301: VHGAEIRDPS KRKTLFLSIK NFIFSVL
Arabidopsis Description
CXE20Probable carboxylesterase 120 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVB8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.