CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g04490.t01	Wine grape	mitochondrion	54.68	68.3
KRH32595	Soybean	nucleus	74.79	56.28
CDY68599	Canola	cytosol	24.02	50.9
KRH19970	Soybean	nucleus	57.41	50.6
Solyc10g083800.1.1	Tomato	nucleus	58.94	38.19
Solyc09g008520.2.1	Tomato	nucleus	58.77	37.1
PGSC0003DMT400009969	Potato	nucleus	59.45	37.05
PGSC0003DMT400072425	Potato	nucleus	43.95	33.64
KRH26543	Soybean	nucleus	50.94	30.45
AT2G36720.1	Thale cress	cytosol	52.13	30.39
KRH22815	Soybean	nucleus	51.28	29.89
CDY63985	Canola	nucleus	50.6	29.0
KRH19715	Soybean	nucleus	43.78	28.91
KRH32312	Soybean	nucleus	43.78	28.84
Bra017226.1-P	Field mustard	nucleus	50.6	28.5
KRH52096	Soybean	nucleus	21.81	21.19
KRH67232	Soybean	nucleus	19.42	18.07
CDY70414	Canola	cytosol, nucleus	19.08	17.61
KRH30259	Soybean	nucleus	22.15	13.73
KRH17051	Soybean	nucleus	21.81	12.13
KRH72700	Soybean	nucleus	21.98	11.74
KRH77859	Soybean	nucleus	21.29	11.36
KRH30263	Soybean	nucleus	22.15	11.21
KRH71410	Soybean	nucleus	21.29	10.59
KRH27632	Soybean	nucleus	16.01	10.12
KRH27324	Soybean	nucleus	21.47	9.61
KRH27635	Soybean	nucleus	21.29	9.54
KRH77858	Soybean	nucleus	21.29	9.48
KRH21991	Soybean	nucleus	21.12	9.44
KRH27633	Soybean	cytosol, nucleus	5.11	9.01

Protein Annotations

MapMan:15.5.30	Gene3D:3.30.40.10	Gene3D:3.40.630.30	UniProt:A0A0R0F060	EMBL:ACUP02012145	InterPro:Acyl_CoA_acyltransferase
EnsemblPlantsGene:GLYMA_19G1879002	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR019787
InterPro:Jas	EnsemblPlants:KRG96074	ProteinID:KRG96074	ProteinID:KRG96074.1	PFAM:PF00628	PFAM:PF16135
ScanProsite:PS01359	PFscan:PS50016	PANTHER:PTHR42672	PANTHER:PTHR42672:SF12	SMART:SM00249	SUPFAM:SSF55729
SUPFAM:SSF57903	UniParc:UPI0006ED946E	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:44599636..44605861

Molecular Weight (calculated)

65620.5 Da

IEP (calculated)

9.348

GRAVY (calculated)

-0.308

Length

587 amino acids

Sequence
(BLAST)

001: CFPSSFVERV GPICRSCVES RKSEESSNNV VGKRVRSPRP VVLSNPSSTS ELSVSSQVKR HRKKRTKASK RIICSNTSKN ASVAVLPRKK NLLKMKKKSL
101: SVKLKSPKKT LNLKSNKSQW RITKKDQRLH KLVFEENGLP DGTEVAYYAR GQKLLEGFKM GSGIVCRCCN TEISPSQFEV HAGWASRKKP YAYIYTSNGV
201: SLHELAISLS KDRKYSAKDN DDLCIVCWDG GNLLLCDGCP RAFHKECAAL SSIPRGDWYC QFCQNMFQRE KFVAHNANAV AAGRVEGVDP IEQIANRCIR
301: IVKDIEADLS SCALCRGVDF SRSGFGPRTI ILCDQCEKEY HVGCLRDHKM AYLKELPEGN WLCCNDCTRI HSTLENLLVK GAERLPESLL GVIKKKQEEK
401: GLEPIIDVRW RLLNGKIASP ETRPLLLEAV SIFHECFNPI VDAASGRDLI PAMVYGRNVR GQEFGGMYCA LLIVNSSVVS AGMLRIFGSD VAELPLVATS
501: NGNHGKGYFQ TLFSCIERLL AFLNVKNLVL PAAEEAESIW TDKFGFSKMN PDELTNYRKN CHQMVSFKGT NMLHKMVPSC RVINNQS

Best Arabidopsis Sequence Match ( AT2G36720.2 )
(BLAST)

0001: MKEDLVPESN SSVWQSPVKR LAVDGECGEA GDRSRTSCKR IKTTQVNGFI VYTRTRKTKF TKLHEQEDEN AGLSNHLEES KPTSGVTSGF GGDMCRSSSV
0101: GETNVSGSSC VKNTLVESSS GKVVVIERLV TGGLAESPAV ETDSSSLVDV VIDDINFVEL LHEAIPVEIL SEGSLDFEVK RLGTKVRTMG KSYSVSEKKK
0201: HGSFKRTAQI YKSIVRMKKV NNLVPENVEV LAEPDFGREG LDEQSHSVSL ADKSILIRSR PETVRDLFET GLLDGLSVVY MGTVKSQAFP LRGIIRDGGI
0301: LCSCSSCDWA NVISTSKFEI HACKQYRRAS QYICFENGKS LLDVLNISRN TPLHALEATI LDAVDYASKE KRFTCKRCKG PFPFSSLGHR GFLCKSCSEV
0401: ETSQASLAAT RTSTSAPACI TSPVKSRLKI TRKPSESTSI SPVFMSSLGN STRKITRKAL RQALVGKAYL SASTNVSSQK KCRSKFKKML TQHSVTPKAL
0501: KSVSLSVSSK KRSYRLARKD QGLHKLVFDR GGLPEGTELG YYARGQKLLG GYKMGAGIYC YCCKCEVSPS LFEAHAGWAS RRKPYFYIYT SNGVSLHEWA
0601: TTFSHGRKYS ANDNNDLCVI CADGGNLLLC DSCPRAFHIE CVSLPSIPRG NWHCKYCENK FTSEIAGEYN VNSSAVGQLE GVDPVDQLAG RCIRVVKNME
0701: AETNGCVLCS GSDFCRSGFG PRTIIICDQC EKEYHIGCLS SQNIVDLKEL PKGNWFCSMD CTRINSTLQK LLLGGAEKLS DSSLGIIQTK QERNDVYSIS
0801: DLDIRWRLIS GKVTSPESRM LLSQALAIFH DCFDPIVDPL SGSNLIPRMV YGKTMQGQDY GGICCAVLTV NATVVSAGLL RVFGREVAEL PLVATRMCSR
0901: EKGYFQLLFS CIEKLLSSLN VESIVVPAAE EAEPLWMNKF GFRKLAPEQL SKYIKICYQM VRFKGASMLQ KPVDSHQIID KTIETGASLE ENFDLKQANE
1001: LYVHPLC

Arabidopsis Description

Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8RWG0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.