CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 5
golgi 5
plasma membrane 8
endoplasmic reticulum 6
vacuole 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45084	Soybean	extracellular, golgi, plasma membrane	78.57	73.66
KRH01360	Soybean	extracellular, golgi, plasma membrane	78.1	73.21
KRH72178	Soybean	mitochondrion	62.14	70.73
KRG93684	Soybean	extracellular, vacuole	71.67	66.3
KRH03165	Soybean	extracellular	71.43	66.08
KRH18352	Soybean	plasma membrane	71.67	65.72
KRH63181	Soybean	endoplasmic reticulum	69.29	63.82
KRH54735	Soybean	endoplasmic reticulum	68.81	63.38
KRG93686	Soybean	extracellular, plasma membrane, vacuole	64.05	62.41
KRH45086	Soybean	plasma membrane	62.62	61.02
KRH01361	Soybean	extracellular, plasma membrane, vacuole	62.62	61.02
KRH56778	Soybean	extracellular	29.05	58.37
KRH18350	Soybean	cytosol	22.14	52.25
KRH63180	Soybean	plasma membrane	55.71	51.09
KRH54737	Soybean	plasma membrane	54.76	50.22
KRH60734	Soybean	plasma membrane	40.95	38.48
KRH51434	Soybean	endoplasmic reticulum, plasma membrane, vacuole	40.71	38.43
KRH02312	Soybean	endoplasmic reticulum, extracellular	28.57	18.63
KRH77883	Soybean	extracellular, plasma membrane, vacuole	26.19	18.36
KRH50776	Soybean	endoplasmic reticulum, vacuole	28.1	18.35
KRH27599	Soybean	extracellular	28.33	18.28
KRH27088	Soybean	mitochondrion	28.33	17.73
KRH22248	Soybean	golgi, vacuole	27.86	17.57
KRH37033	Soybean	extracellular	26.19	16.92

Protein Annotations

EntrezGene:100783820	MapMan:21.1.2.2	EMBL:ACUP02011511	InterPro:COBRA_pln	EnsemblPlantsGene:GLYMA_18G271900	GO:GO:0005575
GO:GO:0008150	GO:GO:0009987	GO:GO:0010215	GO:GO:0016020	GO:GO:0016043	GO:GO:0016049
GO:GO:0031225	GO:GO:0040007	UniProt:I1N4P4	EnsemblPlants:KRH01357	ProteinID:KRH01357	ProteinID:KRH01357.1
PFAM:PD140986	PFAM:PF04833	PIRSF:PIRSF038122	PANTHER:PTHR31673	PANTHER:PTHR31673:SF3	SignalP:SignalP-noTM
UniParc:UPI000233ECC9	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:55493601..55497764

Molecular Weight (calculated)

47060.8 Da

IEP (calculated)

10.024

GRAVY (calculated)

-0.267

Length

420 amino acids

Sequence
(BLAST)

001: MGFSQLPKAT PSILFLVLLS CTCFTSTDAY DPLDPNGNIT IKWDVISWTP DGYVAVVTMN NFLAFRHIPS PGWSMRWTWA KKEVIWNMVG GQATEQGDCS
101: KFKGNIPHSC KKNPTVVDLL PGTPYNQQVA NCCKGGVLTT LVQDPTKAAA SFQVSVGRAG TTNRTVKLPK NFTLKAPGPG YTCGPAKIVR PTKFITPDKR
201: RVTVALMTWK VVCTYSQFLV RKTPTCCVTL SSFHNNTVVP CPTCSCGCQR NSSRSRRCVN PGTPHLASNV TSSGTNNLSP LVQCTKHMCP TQVHWHVMRN
301: SKKYWRVKVT VTNFSYRMNY SDWNLLVQHH NFNNRTQVFG FNYKLLALDA YTNDIAMLWG IKSRHNDILN QAGPKGNVQA ELLFRKDKAT FTFDKGWAFP
401: RRIYFNGDIC VMPPPDAYPF

Best Arabidopsis Sequence Match ( AT3G02210.1 )
(BLAST)

001: MGFFLCSSSS IFFKFGISII FLVSFSGLTP SEAYDPLDPS GNITVKWDII TWTGDGYVAT VTVYNFQQYR HIQAPGWTLG WSWAKREVIW GMNGGQTTEQ
101: GDCSKFKGTI PHCCKKTPSV VDLLPGSPYN QQIANCCRGG VLNSWAQDPA TAVSAFQLTV GQAGTTNKTV RVPKNFTLKA PGPGYTCSPA KIVKPTRFIG
201: TDKRRVTQAL MTWNVTCTYS QFLAQKTPTC CVSLSSFYNK TIVSCPTCSC GCRNTSQPGN CVDPKGPRIA SVIPNPGKNA YIPPLVQCTK HMCPVRIHWH
301: VKVNYKQYWR VKVTITNFNY NMNYSQWNLV VQHPNFDNLT QTFSFNYKPL TPYASINDTG ILWGIKFYND LLMQAGPFGN VQSELLFQKE ASAFTFEKGW
401: AFPRRIYFNG DNCVMPPPDS YPWLPNTGSH KSVGSLFAAM ALLLIVFLHG NL

Arabidopsis Description

COBL1COBL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VHK7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.