Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 7
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH63181 | Soybean | endoplasmic reticulum | 95.83 | 95.83 |
| KRH03165 | Soybean | extracellular | 83.11 | 83.48 |
| VIT_17s0000g05070.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 78.95 | 78.95 |
| KRH72178 | Soybean | mitochondrion | 63.6 | 78.59 |
| PGSC0003DMT400003470 | Potato | extracellular | 76.1 | 77.63 |
| Solyc02g089120.2.1 | Tomato | extracellular | 75.88 | 77.4 |
| KRH01360 | Soybean | extracellular, golgi, plasma membrane | 75.88 | 77.23 |
| KRH45084 | Soybean | extracellular, golgi, plasma membrane | 75.44 | 76.79 |
| PGSC0003DMT400068328 | Potato | extracellular | 73.9 | 75.9 |
| Solyc02g065770.2.1 | Tomato | extracellular | 73.68 | 75.68 |
| AT5G60920.1 | Thale cress | endoplasmic reticulum, plasma membrane, plastid | 75.22 | 75.22 |
| KRG93684 | Soybean | extracellular, vacuole | 74.78 | 75.11 |
| CDY02184 | Canola | plasma membrane | 74.56 | 74.4 |
| CDX87193 | Canola | plasma membrane | 74.34 | 74.34 |
| KRH18352 | Soybean | plasma membrane | 74.56 | 74.24 |
| Bra012996.1-P | Field mustard | plasma membrane | 74.34 | 74.18 |
| Os05t0386800-01 | Rice | extracellular | 74.12 | 73.96 |
| GSMUA_Achr1P24500_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 74.12 | 73.8 |
| CDY16831 | Canola | plasma membrane | 74.12 | 73.8 |
| GSMUA_Achr4P01440_001 | Banana | extracellular, plasma membrane | 73.9 | 73.74 |
| CDY58691 | Canola | plasma membrane | 73.9 | 73.58 |
| Zm00001d031479_P001 | Maize | cytosol, mitochondrion | 26.32 | 73.17 |
| EER97506 | Sorghum | extracellular, plasma membrane | 73.46 | 73.14 |
| Bra035951.1-P | Field mustard | plasma membrane | 73.46 | 73.14 |
| EER90860 | Sorghum | extracellular, golgi, plasma membrane | 71.93 | 73.05 |
| Zm00001d013256_P001 | Maize | extracellular | 71.49 | 72.61 |
| Os07t0604300-01 | Rice | extracellular | 70.18 | 71.75 |
| Os03t0754500-00 | Rice | extracellular | 33.55 | 71.5 |
| Zm00001d034049_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 70.83 | 71.46 |
| CDY42842 | Canola | cytosol | 18.86 | 70.49 |
| TraesCS6D01G364400.1 | Wheat | extracellular | 68.64 | 70.02 |
| TraesCS6B01G418400.1 | Wheat | extracellular | 68.42 | 69.8 |
| TraesCS6A01G379800.1 | Wheat | extracellular | 68.2 | 69.57 |
| OQU92393 | Sorghum | extracellular | 69.96 | 69.2 |
| KRG93686 | Soybean | extracellular, plasma membrane, vacuole | 65.35 | 69.14 |
| Bra029346.1-P | Field mustard | cytosol, plasma membrane, plastid | 18.64 | 69.11 |
| Os03t0416300-01 | Rice | extracellular | 69.3 | 69.0 |
| KRH01357 | Soybean | nucleus | 63.38 | 68.81 |
| TraesCS5D01G401900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 68.64 | 68.49 |
| Zm00001d022081_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 69.08 | 68.48 |
| EER90859 | Sorghum | extracellular | 63.82 | 68.47 |
| TraesCS5B01G396900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 68.42 | 68.27 |
| TraesCS5A01G392000.1 | Wheat | endoplasmic reticulum, extracellular, golgi | 68.42 | 68.27 |
| KRH45086 | Soybean | plasma membrane | 64.47 | 68.21 |
| GSMUA_Achr2P06240_001 | Banana | mitochondrion | 71.27 | 68.13 |
| KRH01361 | Soybean | extracellular, plasma membrane, vacuole | 64.04 | 67.75 |
| HORVU5Hr1G095910.12 | Barley | extracellular, vacuole | 67.11 | 66.52 |
| TraesCS4A01G231200.1 | Wheat | extracellular | 66.67 | 66.09 |
| TraesCS3A01G409900.1 | Wheat | plastid | 39.69 | 65.34 |
| TraesCS2A01G175100.1 | Wheat | extracellular | 64.91 | 65.34 |
| TraesCS4D01G082700.1 | Wheat | extracellular | 65.79 | 65.08 |
| TraesCS4B01G084800.1 | Wheat | extracellular | 64.69 | 64.84 |
| KRH56778 | Soybean | extracellular | 29.61 | 64.59 |
| HORVU4Hr1G014530.1 | Barley | extracellular | 65.57 | 64.58 |
| TraesCS2D01G182500.1 | Wheat | golgi | 64.25 | 64.4 |
| KRH18350 | Soybean | cytosol | 24.78 | 63.48 |
| TraesCS2B01G201500.1 | Wheat | plasma membrane | 63.16 | 62.75 |
| HORVU2Hr1G033070.14 | Barley | mitochondrion | 64.04 | 62.13 |
| Os10t0497700-01 | Rice | extracellular | 56.58 | 60.71 |
| TraesCS3B01G443000.1 | Wheat | cytosol, plasma membrane, vacuole | 55.04 | 60.05 |
| HORVU5Hr1G067940.1 | Barley | plasma membrane, plastid | 60.96 | 58.9 |
| HORVU5Hr1G096010.13 | Barley | endoplasmic reticulum | 35.96 | 58.78 |
| TraesCS5D01G402000.1 | Wheat | extracellular | 29.39 | 58.77 |
| KRH63180 | Soybean | plasma membrane | 58.77 | 58.52 |
| TraesCS5B01G397000.2 | Wheat | extracellular | 28.95 | 58.15 |
| KRH54737 | Soybean | plasma membrane | 58.11 | 57.86 |
| TraesCS3D01G404800.2 | Wheat | plasma membrane | 57.46 | 57.33 |
| KRH60734 | Soybean | plasma membrane | 41.89 | 42.73 |
| KRH51434 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 41.67 | 42.7 |
| KRH77883 | Soybean | extracellular, plasma membrane, vacuole | 26.75 | 20.37 |
| KRH27599 | Soybean | extracellular | 28.95 | 20.28 |
| KRH50776 | Soybean | endoplasmic reticulum, vacuole | 28.29 | 20.06 |
| KRH02312 | Soybean | endoplasmic reticulum, extracellular | 28.29 | 20.03 |
| KRH27088 | Soybean | mitochondrion | 27.19 | 18.48 |
| KRH22248 | Soybean | golgi, vacuole | 26.97 | 18.47 |
| KRH37033 | Soybean | extracellular | 25.88 | 18.15 |
Protein Annotations
| EntrezGene:100815779 | MapMan:21.1.2.2 | EMBL:ACUP02003574 | InterPro:COBRA_pln | EnsemblPlantsGene:GLYMA_06G205400 | GO:GO:0005575 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010215 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 |
| GO:GO:0016049 | GO:GO:0031225 | GO:GO:0040007 | UniProt:I1KD34 | EnsemblPlants:KRH54735 | ProteinID:KRH54735 |
| ProteinID:KRH54735.1 | PFAM:PD140986 | PFAM:PF04833 | PIRSF:PIRSF038122 | PANTHER:PTHR31673 | PANTHER:PTHR31673:SF3 |
| SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI0002339758 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr6:+:19413137..19416803
Molecular Weight (calculated)
50782.9 Da
IEP (calculated)
8.717
GRAVY (calculated)
-0.129
Length
456 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHTMLPAIG SVFPRGVFAA LLLMLLFSFS TFTSIEAYDP LDPTGNITIK WDVISWTPDG YVAVVTMYNF QQYRHIQAPG WSLGWTWAKK EVIWNMMGAQ
101: TTEQGDCSKF KAGIPHCCKK DPTVVDLLPG TPYNQQIANC CKGGVLNSWG QDPSNAVSSF QISVGSAGTT NKTVKMPKNF TLKAPGPGYT CGPAKVVKPT
201: VFITNDKRRT TQAMMTWNIT CTYSQFLAQK APSCCVSLSS FYNDTVVNCP TCTCGCRNKT EPGSCVDPNS PHLASVVSAS GKTANTPLVQ CTSHMCPIRV
301: HWHVKLNYKE YWRVKITITN FNYRMNYSQW NLVVQHPNLD NITQLFSFNY KSLNPYEGLN DTSMLWGVKF YNDFLSSAGS LGNVQSEILL RKDKSTFTFD
401: KGWAFPRRIY FNGDNCVMPP PDAYPWLPNA SSKLVFSLLS TVIATLASLL ILLNQS
101: TTEQGDCSKF KAGIPHCCKK DPTVVDLLPG TPYNQQIANC CKGGVLNSWG QDPSNAVSSF QISVGSAGTT NKTVKMPKNF TLKAPGPGYT CGPAKVVKPT
201: VFITNDKRRT TQAMMTWNIT CTYSQFLAQK APSCCVSLSS FYNDTVVNCP TCTCGCRNKT EPGSCVDPNS PHLASVVSAS GKTANTPLVQ CTSHMCPIRV
301: HWHVKLNYKE YWRVKITITN FNYRMNYSQW NLVVQHPNLD NITQLFSFNY KSLNPYEGLN DTSMLWGVKF YNDFLSSAGS LGNVQSEILL RKDKSTFTFD
401: KGWAFPRRIY FNGDNCVMPP PDAYPWLPNA SSKLVFSLLS TVIATLASLL ILLNQS
001: MESFFSRSTS IVSKLSFLAL WIVFLISSSS FTSTEAYDAL DPEGNITMKW DVMSWTPDGY VAVVTMFNFQ KYRHIQSPGW TLGWKWAKKE VIWSMVGAQT
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
Arabidopsis Description
COBProtein COBRA [Source:UniProtKB/Swiss-Prot;Acc:Q94KT8]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.