Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G418400.1 | Wheat | extracellular | 97.54 | 97.54 |
| TraesCS6A01G379800.1 | Wheat | extracellular | 97.54 | 97.54 |
| TraesCS5D01G401900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 84.79 | 82.93 |
| Zm00001d031479_P001 | Maize | cytosol, mitochondrion | 29.98 | 81.71 |
| Zm00001d013256_P001 | Maize | extracellular | 81.66 | 81.29 |
| EER90860 | Sorghum | extracellular, golgi, plasma membrane | 81.66 | 81.29 |
| Zm00001d034049_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 81.21 | 80.31 |
| VIT_14s0083g01160.t01 | Wine grape | vacuole | 70.47 | 72.25 |
| KRH72178 | Soybean | mitochondrion | 59.51 | 72.09 |
| VIT_17s0000g05070.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 73.38 | 71.93 |
| Solyc02g065770.2.1 | Tomato | extracellular | 70.92 | 71.4 |
| GSMUA_Achr4P01440_001 | Banana | extracellular, plasma membrane | 72.93 | 71.33 |
| PGSC0003DMT400068328 | Potato | extracellular | 70.47 | 70.95 |
| GSMUA_Achr1P24500_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 72.48 | 70.74 |
| PGSC0003DMT400003470 | Potato | extracellular | 70.02 | 70.02 |
| Solyc02g089120.2.1 | Tomato | extracellular | 69.57 | 69.57 |
| CDX86358 | Canola | extracellular | 67.79 | 69.5 |
| Bra025406.1-P | Field mustard | extracellular | 67.79 | 69.5 |
| KRH01360 | Soybean | extracellular, golgi, plasma membrane | 69.13 | 68.97 |
| CDX85277 | Canola | extracellular | 67.11 | 68.81 |
| CDY70289 | Canola | extracellular | 61.07 | 68.77 |
| KRH54735 | Soybean | endoplasmic reticulum | 70.02 | 68.64 |
| KRH45084 | Soybean | extracellular, golgi, plasma membrane | 68.68 | 68.53 |
| KRH63181 | Soybean | endoplasmic reticulum | 69.8 | 68.42 |
| KRH03165 | Soybean | extracellular | 69.35 | 68.28 |
| Bra040587.1-P | Field mustard | extracellular | 66.0 | 67.2 |
| GSMUA_Achr2P06240_001 | Banana | mitochondrion | 71.59 | 67.09 |
| AT3G29810.1 | Thale cress | extracellular | 65.77 | 66.67 |
| KRG93684 | Soybean | extracellular, vacuole | 67.56 | 66.52 |
| KRH18352 | Soybean | plasma membrane | 67.79 | 66.16 |
| AT5G60920.1 | Thale cress | endoplasmic reticulum, plasma membrane, plastid | 66.67 | 65.35 |
| CDX87193 | Canola | plasma membrane | 66.44 | 65.13 |
| CDY58691 | Canola | plasma membrane | 66.44 | 64.85 |
| CDY16831 | Canola | plasma membrane | 66.44 | 64.85 |
| CDY02184 | Canola | plasma membrane | 66.22 | 64.77 |
| Bra012996.1-P | Field mustard | plasma membrane | 66.0 | 64.55 |
| AT3G02210.1 | Thale cress | extracellular | 65.1 | 64.38 |
| Bra035951.1-P | Field mustard | plasma membrane | 65.77 | 64.19 |
| TraesCS5D01G402000.1 | Wheat | extracellular | 32.66 | 64.04 |
| Os10t0497700-01 | Rice | extracellular | 60.85 | 64.0 |
| TraesCS4D01G082700.1 | Wheat | extracellular | 65.77 | 63.77 |
| Bra039163.1-P | Field mustard | endoplasmic reticulum, plasma membrane, plastid | 64.65 | 63.52 |
| CDY60470 | Canola | plasma membrane | 64.88 | 63.32 |
| CDY43250 | Canola | plasma membrane | 64.65 | 63.24 |
| TraesCS2D01G182500.1 | Wheat | golgi | 63.98 | 62.86 |
| TraesCS2D01G182400.1 | Wheat | plasma membrane | 61.3 | 61.3 |
| TraesCS5D01G107900.1 | Wheat | extracellular | 61.52 | 61.25 |
| CDY24004 | Canola | cytosol, nucleus, plastid | 11.41 | 60.0 |
| KRH56778 | Soybean | extracellular | 27.07 | 57.89 |
| CDY42842 | Canola | cytosol | 15.44 | 56.56 |
| TraesCS3D01G047900.1 | Wheat | plastid | 29.98 | 53.82 |
| Bra029346.1-P | Field mustard | cytosol, plasma membrane, plastid | 14.77 | 53.66 |
| TraesCS3D01G404800.2 | Wheat | plasma membrane | 54.59 | 53.39 |
| CDY29033 | Canola | cytosol | 21.48 | 52.75 |
| TraesCS2D01G386400.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 46.76 | 47.29 |
| CDY14723 | Canola | cytosol | 26.17 | 36.79 |
| TraesCS4D01G188600.1 | Wheat | golgi | 27.96 | 18.57 |
| TraesCS2D01G092100.1 | Wheat | plasma membrane | 27.29 | 18.48 |
| TraesCS7D01G136500.1 | Wheat | mitochondrion | 27.29 | 18.1 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G364400.1 | EnsemblPlantsGene:TraesCS6D01G364400 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010215 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0031225 | GO:GO:0040007 | InterPro:COBRA_pln |
| PANTHER:PTHR31673 | PANTHER:PTHR31673:SF3 | PFAM:PD140986 | PFAM:PF04833 | PIRSF:PIRSF038122 | SEG:seg |
| SignalP:SignalP-noTM | MapMan:21.1.2.2 | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:454230135..454233225
Molecular Weight (calculated)
49802.6 Da
IEP (calculated)
8.734
GRAVY (calculated)
-0.254
Length
447 amino acids
Sequence
(BLAST)
(BLAST)
001: MAALGGCAVL LAAALLLSAP AATEAYDSLD PNGNITIKWD LKEWTPDGYV AMVTIYNYQQ FRHISAPGWQ LGWTWAKKEV IWSMVGAQTT EQGDCSKFKT
101: NPPHCCKRDP TVIDLLPGTP YKDQVANCCK GGVISTFNQD PANAASSFQI SVGLAGTTNK TVKVPKNFTL KTPGPGYTCG RATVVRPTKF LMGDGRRTTQ
201: ALMTWNVTCT YSQFLAQKTP TCCVALSSFY NNTIVGCPTC SCGCQNNNTH PGSCVNPNSP YLQSAIDGPG KYTGQPLVQC TSHMCPVKVH WHVKLNYKDY
301: WRVKVTITNF NYRMNYTDWN LVVQHPNFNN ITKLFSFNYK PLSPYGGRIN DSAMFWGMKF YNDLLNQAGP FGNAQTEILL QKDPETFTFE KGWGFPRRVY
401: FNGDNCVMPP PDAYPWLPNA SPPMKQPWTL KLLVFWTALA TLLAYYV
101: NPPHCCKRDP TVIDLLPGTP YKDQVANCCK GGVISTFNQD PANAASSFQI SVGLAGTTNK TVKVPKNFTL KTPGPGYTCG RATVVRPTKF LMGDGRRTTQ
201: ALMTWNVTCT YSQFLAQKTP TCCVALSSFY NNTIVGCPTC SCGCQNNNTH PGSCVNPNSP YLQSAIDGPG KYTGQPLVQC TSHMCPVKVH WHVKLNYKDY
301: WRVKVTITNF NYRMNYTDWN LVVQHPNFNN ITKLFSFNYK PLSPYGGRIN DSAMFWGMKF YNDLLNQAGP FGNAQTEILL QKDPETFTFE KGWGFPRRVY
401: FNGDNCVMPP PDAYPWLPNA SPPMKQPWTL KLLVFWTALA TLLAYYV
001: MESFFSRSTS IVSKLSFLAL WIVFLISSSS FTSTEAYDAL DPEGNITMKW DVMSWTPDGY VAVVTMFNFQ KYRHIQSPGW TLGWKWAKKE VIWSMVGAQT
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
Arabidopsis Description
COBProtein COBRA [Source:UniProtKB/Swiss-Prot;Acc:Q94KT8]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.