Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 7
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400068328 | Potato | extracellular | 96.85 | 96.85 |
| Solyc02g089120.2.1 | Tomato | extracellular | 87.16 | 86.58 |
| VIT_17s0000g05070.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 80.18 | 78.07 |
| GSMUA_Achr4P01440_001 | Banana | extracellular, plasma membrane | 78.15 | 75.93 |
| Zm00001d031479_P001 | Maize | cytosol, mitochondrion | 27.93 | 75.61 |
| GSMUA_Achr1P24500_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 77.93 | 75.55 |
| AT5G60920.1 | Thale cress | endoplasmic reticulum, plasma membrane, plastid | 76.58 | 74.56 |
| KRH63181 | Soybean | endoplasmic reticulum | 75.9 | 73.9 |
| KRH54735 | Soybean | endoplasmic reticulum | 75.68 | 73.68 |
| KRH03165 | Soybean | extracellular | 75.23 | 73.57 |
| Os05t0386800-01 | Rice | extracellular | 75.68 | 73.52 |
| Zm00001d013256_P001 | Maize | extracellular | 74.32 | 73.5 |
| Os03t0754500-00 | Rice | extracellular | 35.36 | 73.36 |
| EER90860 | Sorghum | extracellular, golgi, plasma membrane | 73.87 | 73.05 |
| CDX87193 | Canola | plasma membrane | 74.77 | 72.81 |
| CDY16831 | Canola | plasma membrane | 75.0 | 72.71 |
| CDY02184 | Canola | plasma membrane | 74.77 | 72.65 |
| CDY58691 | Canola | plasma membrane | 74.77 | 72.49 |
| Bra012996.1-P | Field mustard | plasma membrane | 74.55 | 72.43 |
| Bra035951.1-P | Field mustard | plasma membrane | 74.32 | 72.05 |
| Zm00001d034049_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 73.2 | 71.9 |
| TraesCS6D01G364400.1 | Wheat | extracellular | 71.4 | 70.92 |
| EER97506 | Sorghum | extracellular, plasma membrane | 72.97 | 70.74 |
| Os07t0604300-01 | Rice | extracellular | 70.95 | 70.63 |
| TraesCS5A01G392000.1 | Wheat | endoplasmic reticulum, extracellular, golgi | 72.52 | 70.46 |
| TraesCS5B01G396900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 72.52 | 70.46 |
| TraesCS5D01G401900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 72.52 | 70.46 |
| TraesCS6A01G379800.1 | Wheat | extracellular | 70.27 | 69.8 |
| TraesCS6B01G418400.1 | Wheat | extracellular | 70.27 | 69.8 |
| GSMUA_Achr2P06240_001 | Banana | mitochondrion | 74.77 | 69.6 |
| HORVU5Hr1G095910.12 | Barley | extracellular, vacuole | 71.85 | 69.35 |
| EER90859 | Sorghum | extracellular | 66.22 | 69.18 |
| Zm00001d022081_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 70.5 | 68.04 |
| Solyc02g089130.2.1 | Tomato | extracellular | 65.99 | 67.51 |
| Solyc03g070440.2.1 | Tomato | extracellular | 65.32 | 67.29 |
| Solyc03g114910.2.1 | Tomato | extracellular, plasma membrane, vacuole | 69.37 | 67.25 |
| OQU92393 | Sorghum | extracellular | 69.37 | 66.81 |
| Solyc03g114890.2.1 | Tomato | extracellular | 59.91 | 66.33 |
| Os03t0416300-01 | Rice | extracellular | 68.24 | 66.16 |
| TraesCS3A01G409900.1 | Wheat | plastid | 40.09 | 64.26 |
| TraesCS2A01G175100.1 | Wheat | extracellular | 65.54 | 64.24 |
| Bra029346.1-P | Field mustard | cytosol, plasma membrane, plastid | 17.79 | 64.23 |
| TraesCS4A01G231200.1 | Wheat | extracellular | 66.44 | 64.13 |
| TraesCS2D01G182500.1 | Wheat | golgi | 64.86 | 63.3 |
| TraesCS4D01G082700.1 | Wheat | extracellular | 65.54 | 63.12 |
| TraesCS4B01G084800.1 | Wheat | extracellular | 64.64 | 63.08 |
| HORVU4Hr1G014530.1 | Barley | extracellular | 65.09 | 62.42 |
| Solyc03g114900.2.1 | Tomato | extracellular | 62.84 | 62.42 |
| CDY42842 | Canola | cytosol | 17.12 | 62.3 |
| TraesCS2B01G201500.1 | Wheat | plasma membrane | 63.96 | 61.87 |
| KRH56778 | Soybean | extracellular | 28.83 | 61.24 |
| Solyc03g070460.1.1 | Tomato | cytosol | 15.99 | 61.21 |
| HORVU2Hr1G033070.14 | Barley | mitochondrion | 64.64 | 61.06 |
| Os10t0497700-01 | Rice | extracellular | 57.66 | 60.24 |
| TraesCS3B01G443000.1 | Wheat | cytosol, plasma membrane, vacuole | 55.41 | 58.85 |
| TraesCS5D01G402000.1 | Wheat | extracellular | 30.18 | 58.77 |
| HORVU5Hr1G067940.1 | Barley | plasma membrane, plastid | 61.94 | 58.26 |
| TraesCS5B01G397000.2 | Wheat | extracellular | 29.73 | 58.15 |
| HORVU5Hr1G096010.13 | Barley | endoplasmic reticulum | 35.59 | 56.63 |
| TraesCS3D01G404800.2 | Wheat | plasma membrane | 57.21 | 55.58 |
| Solyc01g103860.2.1 | Tomato | cytosol | 49.77 | 52.25 |
| Solyc03g114880.1.1 | Tomato | cytosol, extracellular, vacuole | 36.04 | 50.16 |
| Solyc02g064790.1.1 | Tomato | extracellular, vacuole | 7.43 | 47.83 |
| Solyc01g111050.2.1 | Tomato | cytosol | 43.47 | 41.15 |
| Solyc03g070450.1.1 | Tomato | extracellular, vacuole | 19.82 | 40.93 |
| Solyc02g080250.1.1 | Tomato | cytosol | 18.69 | 24.27 |
| Solyc09g075540.1.1 | Tomato | plasma membrane | 29.05 | 19.79 |
| Solyc01g065530.2.1 | Tomato | nucleus, plastid | 28.6 | 19.6 |
| Solyc10g006450.2.1 | Tomato | golgi, plasma membrane, vacuole | 28.6 | 18.93 |
| Solyc07g064200.2.1 | Tomato | extracellular, golgi, vacuole | 23.42 | 16.91 |
| Solyc02g080240.1.1 | Tomato | extracellular | 12.61 | 14.55 |
Protein Annotations
| MapMan:21.1.2.2 | InterPro:COBRA_pln | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010215 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0031225 | GO:GO:0040007 | EMBL:JN398667 |
| UniProt:K4B708 | PFAM:PD140986 | PFAM:PF04833 | PIRSF:PIRSF038122 | PFscan:PS51257 | PANTHER:PTHR31673 |
| PANTHER:PTHR31673:SF3 | SignalP:SignalP-noTM | EnsemblPlantsGene:Solyc02g065770.2 | EnsemblPlants:Solyc02g065770.2.1 | UniParc:UPI0002768DF5 | SEG:seg |
Description
COBRA protein [Source:UniProtKB/TrEMBL;Acc:K4B708]
Coordinates
chr2:-:36912437..36916521
Molecular Weight (calculated)
49837.8 Da
IEP (calculated)
8.344
GRAVY (calculated)
-0.139
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFFRSTILL VFLLSCFSFS ATDAFDALDP NGNITIKWDV ISWTPDGYVA VVTMFNFQQY RHIQAPGWTL GWTWAKKEVI WGMMGAQTTE QGDCSKFKGN
101: IPHCCKRDPT VVDLLPGTPY NQQIANCCKG GVINSWGQDP ETAVSSFQVS VGAAGTTNKT VRVPKNFTLK APGPGYTCGP AKVVKPTKFS SGDGRRITQA
201: MMTWNVTCTY SQFLAQKTPT CCVSLSSFYN DTIVPCPTCT CGCQKNGTQH GNCVDQDEPH LASVVSGLGK NNYAPLVQCT SHMCPIRIHW HVKLNYKEYW
301: RVKVTITNFN YNMNYTQWNL VVQHPNFDNL TQLFSFHYKS LTPYGAINDT AMLWGMKFYN DLLMQAGPLG NVQSELLFRK DMSTFTFEKG WAFPHRVYFN
401: GDNCVMPQPD SYPYMPNAGT VWKVSSLKLV VTLILSMAFF FATV
101: IPHCCKRDPT VVDLLPGTPY NQQIANCCKG GVINSWGQDP ETAVSSFQVS VGAAGTTNKT VRVPKNFTLK APGPGYTCGP AKVVKPTKFS SGDGRRITQA
201: MMTWNVTCTY SQFLAQKTPT CCVSLSSFYN DTIVPCPTCT CGCQKNGTQH GNCVDQDEPH LASVVSGLGK NNYAPLVQCT SHMCPIRIHW HVKLNYKEYW
301: RVKVTITNFN YNMNYTQWNL VVQHPNFDNL TQLFSFHYKS LTPYGAINDT AMLWGMKFYN DLLMQAGPLG NVQSELLFRK DMSTFTFEKG WAFPHRVYFN
401: GDNCVMPQPD SYPYMPNAGT VWKVSSLKLV VTLILSMAFF FATV
001: MESFFSRSTS IVSKLSFLAL WIVFLISSSS FTSTEAYDAL DPEGNITMKW DVMSWTPDGY VAVVTMFNFQ KYRHIQSPGW TLGWKWAKKE VIWSMVGAQT
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
Arabidopsis Description
COBProtein COBRA [Source:UniProtKB/Swiss-Prot;Acc:Q94KT8]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.