Factsheet for Solyc03g114880.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole, cytosol

Predictor Summary:

nucleus 1
plasma membrane 2
mitochondrion 2
extracellular 1
cytosol 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g114890.2.1	Tomato	extracellular	60.5	48.13
Solyc02g089120.2.1	Tomato	extracellular	52.35	37.36
Solyc03g070440.2.1	Tomato	extracellular	49.22	36.43
Solyc02g089130.2.1	Tomato	extracellular	49.22	36.18
Solyc02g065770.2.1	Tomato	extracellular	50.16	36.04
Solyc03g114900.2.1	Tomato	extracellular	49.53	35.35
Solyc03g114910.2.1	Tomato	extracellular, plasma membrane, vacuole	47.96	33.41
Solyc02g064790.1.1	Tomato	extracellular, vacuole	6.9	31.88
Solyc01g103860.2.1	Tomato	cytosol	36.05	27.19
Solyc03g070460.1.1	Tomato	cytosol	9.09	25.0
Solyc01g111050.2.1	Tomato	cytosol	35.42	24.09
Solyc03g070450.1.1	Tomato	extracellular, vacuole	12.85	19.07
Solyc02g080250.1.1	Tomato	cytosol	16.3	15.2
Solyc01g065530.2.1	Tomato	nucleus, plastid	24.76	12.19
Solyc09g075540.1.1	Tomato	plasma membrane	24.14	11.81
Solyc10g006450.2.1	Tomato	golgi, plasma membrane, vacuole	22.57	10.73
Solyc07g064200.2.1	Tomato	extracellular, golgi, vacuole	19.75	10.24
Solyc02g080240.1.1	Tomato	extracellular	10.66	8.83

Protein Annotations

EnsemblPlants:Solyc03g114880.1.1	EnsemblPlantsGene:Solyc03g114880.1	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215
GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	InterPro:COBRA_pln
PANTHER:PTHR31673	PANTHER:PTHR31673:SF2	PFAM:PD140986	PFAM:PF04833	PIRSF:PIRSF038122	SEG:seg
UniParc:UPI00027685A6	UniProt:K4BKZ0	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr3:+:64759577..64761180

Molecular Weight (calculated)

36263.0 Da

IEP (calculated)

9.321

GRAVY (calculated)

-0.174

Length

319 amino acids

Sequence
(BLAST)

001: MHTVRLFDSA FGFNRTTKKE VFITSQSQLH LLLLQKISCS CISSWSPTFF GTHIHLCFLC RYSAYDALDP KGNITIKWDL IFWTHDSYAV VTMNNFQMYR
101: PIMSPGWTWA KNEVIWDLLG IQTNTTVKLP KNFTLVAPGG GYTCGPAKII RPTQFVTNDG RRVTQAMILS RSKTNMLCIT PCPLCSCGCR NSSNCVSYNR
201: AMHKMCPINV HWHVKSNYNK IDWSVKMTIT NFNYTQWTLV VQHPNLNNMT QPCFMGESHI IHILMQAGPK GNRHSDLTLE KDGKTIALKN PQRAYFNGNL
301: CVMPSPESYP FLPNSAGTI

Best Arabidopsis Sequence Match ( AT3G02210.1 )
(BLAST)

001: MGFFLCSSSS IFFKFGISII FLVSFSGLTP SEAYDPLDPS GNITVKWDII TWTGDGYVAT VTVYNFQQYR HIQAPGWTLG WSWAKREVIW GMNGGQTTEQ
101: GDCSKFKGTI PHCCKKTPSV VDLLPGSPYN QQIANCCRGG VLNSWAQDPA TAVSAFQLTV GQAGTTNKTV RVPKNFTLKA PGPGYTCSPA KIVKPTRFIG
201: TDKRRVTQAL MTWNVTCTYS QFLAQKTPTC CVSLSSFYNK TIVSCPTCSC GCRNTSQPGN CVDPKGPRIA SVIPNPGKNA YIPPLVQCTK HMCPVRIHWH
301: VKVNYKQYWR VKVTITNFNY NMNYSQWNLV VQHPNFDNLT QTFSFNYKPL TPYASINDTG ILWGIKFYND LLMQAGPFGN VQSELLFQKE ASAFTFEKGW
401: AFPRRIYFNG DNCVMPPPDS YPWLPNTGSH KSVGSLFAAM ALLLIVFLHG NL

Arabidopsis Description

COBL1COBL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VHK7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.