Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 5
- plastid 1
- extracellular 3
- endoplasmic reticulum 2
- vacuole 3
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400063318 | Potato | cytosol | 77.07 | 87.38 |
| Solyc02g065770.2.1 | Tomato | extracellular | 67.25 | 69.37 |
| Solyc02g089120.2.1 | Tomato | extracellular | 67.25 | 68.9 |
| Solyc02g089130.2.1 | Tomato | extracellular | 60.26 | 63.59 |
| Solyc03g070440.2.1 | Tomato | extracellular | 58.3 | 61.95 |
| Solyc03g114890.2.1 | Tomato | extracellular | 53.28 | 60.85 |
| Solyc03g114900.2.1 | Tomato | extracellular | 56.55 | 57.94 |
| Solyc03g070460.1.1 | Tomato | cytosol | 13.1 | 51.72 |
| Solyc01g103860.2.1 | Tomato | cytosol | 46.94 | 50.83 |
| Solyc02g064790.1.1 | Tomato | extracellular, vacuole | 7.42 | 49.28 |
| Solyc03g114880.1.1 | Tomato | cytosol, extracellular, vacuole | 33.41 | 47.96 |
| Solyc01g111050.2.1 | Tomato | cytosol | 43.01 | 42.0 |
| Solyc03g070450.1.1 | Tomato | extracellular, vacuole | 17.03 | 36.28 |
| Solyc02g080250.1.1 | Tomato | cytosol | 18.78 | 25.15 |
| Solyc01g065530.2.1 | Tomato | nucleus, plastid | 28.6 | 20.22 |
| Solyc09g075540.1.1 | Tomato | plasma membrane | 28.17 | 19.79 |
| Solyc10g006450.2.1 | Tomato | golgi, plasma membrane, vacuole | 26.42 | 18.03 |
| Solyc07g064200.2.1 | Tomato | extracellular, golgi, vacuole | 22.05 | 16.42 |
| Solyc02g080240.1.1 | Tomato | extracellular | 12.88 | 15.32 |
Protein Annotations
| EnsemblPlants:Solyc03g114910.2.1 | EnsemblPlantsGene:Solyc03g114910.2 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010215 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0031225 | GO:GO:0040007 | InterPro:COBRA_pln |
| PANTHER:PTHR31673 | PANTHER:PTHR31673:SF3 | PFAM:PD140986 | PFAM:PF04833 | PIRSF:PIRSF038122 | SignalP:SignalP-TM |
| UniParc:UPI00027685A9 | UniProt:K4BKZ3 | MapMan:21.1.2.2 | : | : | : |
Description
No Description!
Coordinates
chr3:-:64775251..64778049
Molecular Weight (calculated)
51647.6 Da
IEP (calculated)
8.100
GRAVY (calculated)
-0.215
Length
458 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVCLCSISR SSINKFGSYA ILIALLFSLM CYTSTDAYDT LDPNGNITVK WDIKSWTTDG YMAIVTIYNF QMYRHIEAPG WQLGWTWTKK EIIWSAVGGQ
101: ATEEGDCSKF KENIPHCCKR DPSIVDLLPG TPYNQQISNC CRGGVISSWV QDPENAVSAF QLTVGLAGTS NKTVRLPKNF TLQTPGHGYT CGPAVKGKPT
201: KFLTPDGRRF TQALMTWNVI CTYSQFLAQR TPTCCVSLSS FYNNTIINCP TCTCGCQNNI TQPGTCVEPD SPYLASTLLS SGKDDDSPVV RCTKHMCPIR
301: VHWHIKSNYK AYWRVKITIT NFNYKMNYSQ WNLVVQHPNF ENLTQIFSFN YEPLLPYGSI NDTAMFWGIQ YYNDQLMQAG PSGNVQSEII FQKDKSKFTF
401: EKGWAFPRKV YFNGDNCVMP PPDAYPYLPN ASAYSRLTLL HSLAGFLASL VLLYSHNL
101: ATEEGDCSKF KENIPHCCKR DPSIVDLLPG TPYNQQISNC CRGGVISSWV QDPENAVSAF QLTVGLAGTS NKTVRLPKNF TLQTPGHGYT CGPAVKGKPT
201: KFLTPDGRRF TQALMTWNVI CTYSQFLAQR TPTCCVSLSS FYNNTIINCP TCTCGCQNNI TQPGTCVEPD SPYLASTLLS SGKDDDSPVV RCTKHMCPIR
301: VHWHIKSNYK AYWRVKITIT NFNYKMNYSQ WNLVVQHPNF ENLTQIFSFN YEPLLPYGSI NDTAMFWGIQ YYNDQLMQAG PSGNVQSEII FQKDKSKFTF
401: EKGWAFPRKV YFNGDNCVMP PPDAYPYLPN ASAYSRLTLL HSLAGFLASL VLLYSHNL
001: MESFFSRSTS IVSKLSFLAL WIVFLISSSS FTSTEAYDAL DPEGNITMKW DVMSWTPDGY VAVVTMFNFQ KYRHIQSPGW TLGWKWAKKE VIWSMVGAQT
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
Arabidopsis Description
COBProtein COBRA [Source:UniProtKB/Swiss-Prot;Acc:Q94KT8]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.