Factsheet for PGSC0003DMT400063318

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plasma membrane 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g114910.2.1	Tomato	extracellular, plasma membrane, vacuole	87.38	77.07
PGSC0003DMT400003470	Potato	extracellular	66.58	60.18
PGSC0003DMT400068328	Potato	extracellular	64.85	59.01
PGSC0003DMT400003723	Potato	extracellular	60.64	56.45
PGSC0003DMT400002674	Potato	plasma membrane	59.16	55.07
PGSC0003DMT400082702	Potato	extracellular	33.17	54.03
PGSC0003DMT400063055	Potato	extracellular, mitochondrion	57.43	50.99
PGSC0003DMT400004139	Potato	extracellular	20.79	40.78
PGSC0003DMT400081003	Potato	cytosol	8.66	30.17
PGSC0003DMT400002688	Potato	cytosol	7.92	24.81
PGSC0003DMT400002667	Potato	cytosol, golgi, peroxisome	9.41	24.36
PGSC0003DMT400065836	Potato	cytosol	25.99	22.39
PGSC0003DMT400065840	Potato	endoplasmic reticulum, extracellular, plasma membrane	26.73	16.59
PGSC0003DMT400037398	Potato	vacuole	25.99	15.84
PGSC0003DMT400002678	Potato	vacuole	25.25	15.43
PGSC0003DMT400005270	Potato	cytosol	25.99	14.66

Protein Annotations

EnsemblPlants:PGSC0003DMT400063318	EnsemblPlantsGene:PGSC0003DMG400024628	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215
GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	InterPro:COBRA_pln
PANTHER:PTHR31673	PANTHER:PTHR31673:SF3	PFAM:PD140986	PFAM:PF04833	PGSC:PGSC0003DMG400024628	PIRSF:PIRSF038122
SEG:seg	UniParc:UPI000294D9B8	UniProt:M1CAH0	MapMan:21.1.2.2	:	:

Description

COBRA 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400024628]

Coordinates

chr3:-:54863884..54866403

Molecular Weight (calculated)

45765.7 Da

IEP (calculated)

8.672

GRAVY (calculated)

-0.288

Length

404 amino acids

Sequence
(BLAST)

001: MCFTSTDAYD SLDPNGNITV KWDIKSWTPD GYIAIVTIYN FQKYRHIQAP GWQLGWTWAK KEIIWSAAGG QATEQGDCSK FKGSIPHCCK RDPFIVDLLP
101: GTPYNQQVSN CCRGGVISSW VQDPEKAVSA FQITVGQAGT SNKTVRLPKN FTLKAPGHGY TCGPAMKGKP TKFLTPDGRR FTQALILSSE DTDLLCLTVL
201: FLQQHNYKLS DLHMPDSPYL ASTLLSSGKD DDSPVVRCTK HMCPIRVHWH IKTNYKAYWR VKITITNFNY KMNYSQWNLV VQHPSFENLT QIFSFNYEPL
301: LPYGSINDTA MFWGIQYYND QLMQGGPSGN VQSEIILQKD KLKFTFEKGW AFPRKVYFNG DNCVMPPPDA YPYLPNASAY SRLTLLHSLV AILVSLVLLY
401: SHNL

Best Arabidopsis Sequence Match ( AT3G02210.1 )
(BLAST)

001: MGFFLCSSSS IFFKFGISII FLVSFSGLTP SEAYDPLDPS GNITVKWDII TWTGDGYVAT VTVYNFQQYR HIQAPGWTLG WSWAKREVIW GMNGGQTTEQ
101: GDCSKFKGTI PHCCKKTPSV VDLLPGSPYN QQIANCCRGG VLNSWAQDPA TAVSAFQLTV GQAGTTNKTV RVPKNFTLKA PGPGYTCSPA KIVKPTRFIG
201: TDKRRVTQAL MTWNVTCTYS QFLAQKTPTC CVSLSSFYNK TIVSCPTCSC GCRNTSQPGN CVDPKGPRIA SVIPNPGKNA YIPPLVQCTK HMCPVRIHWH
301: VKVNYKQYWR VKVTITNFNY NMNYSQWNLV VQHPNFDNLT QTFSFNYKPL TPYASINDTG ILWGIKFYND LLMQAGPFGN VQSELLFQKE ASAFTFEKGW
401: AFPRRIYFNG DNCVMPPPDS YPWLPNTGSH KSVGSLFAAM ALLLIVFLHG NL

Arabidopsis Description

COBL1COBL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VHK7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.