Factsheet for PGSC0003DMT400002667

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, cytosol

Predictor Summary:

nucleus 1
plasma membrane 2
cytosol 1
extracellular 1
mitochondrion 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081003	Potato	cytosol	74.36	100.0
PGSC0003DMT400004139	Potato	extracellular	20.51	15.53
PGSC0003DMT400002688	Potato	cytosol	10.26	12.4
PGSC0003DMT400003470	Potato	extracellular	31.41	10.96
PGSC0003DMT400068328	Potato	extracellular	30.77	10.81
PGSC0003DMT400002674	Potato	plasma membrane	26.28	9.45
PGSC0003DMT400063318	Potato	cytosol	24.36	9.41
PGSC0003DMT400063055	Potato	extracellular, mitochondrion	24.36	8.35
PGSC0003DMT400003723	Potato	extracellular	23.08	8.29
PGSC0003DMT400065836	Potato	cytosol	13.46	4.48
PGSC0003DMT400037398	Potato	vacuole	16.03	3.77
PGSC0003DMT400082702	Potato	extracellular	5.77	3.63
PGSC0003DMT400065840	Potato	endoplasmic reticulum, extracellular, plasma membrane	14.1	3.38
PGSC0003DMT400002678	Potato	vacuole	14.1	3.33
PGSC0003DMT400005270	Potato	cytosol	13.46	2.93
Solyc02g080240.1.1	Tomato	extracellular	1.28	0.52
Bra035948.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400002667	EnsemblPlantsGene:PGSC0003DMG400001027	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007
InterPro:COBRA_pln	PANTHER:PTHR31673	PANTHER:PTHR31673:SF3	PGSC:PGSC0003DMG400001027	SEG:seg	TMHMM:TMhelix
UniParc:UPI000296D8FC	UniProt:M0ZKF9	MapMan:21.1.2.2	:	:	:

Description

Phytochelatin synthetase [Source:PGSC_GENE;Acc:PGSC0003DMG400001027]

Coordinates

chr3:+:12016367..12017447

Molecular Weight (calculated)

17705.1 Da

IEP (calculated)

6.233

GRAVY (calculated)

-0.243

Length

156 amino acids

Sequence
(BLAST)

001: MNYSQWNLIV QHSNLDNITQ VFNINYKSLT PYGDQINDTA MLWGVKSSND LLVQPGPSGN VQFELLLRKD TSNLTLDKGW AFPRRVYFNG DNCIMPPSEA
101: YPHLSNDVSA MPPPDADPHM PNAASQWKVS LLKLVVTVMF SMTFFFANTY KSYALY

Best Arabidopsis Sequence Match ( AT5G60920.1 )
(BLAST)

001: MESFFSRSTS IVSKLSFLAL WIVFLISSSS FTSTEAYDAL DPEGNITMKW DVMSWTPDGY VAVVTMFNFQ KYRHIQSPGW TLGWKWAKKE VIWSMVGAQT
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA

Arabidopsis Description

COBProtein COBRA [Source:UniProtKB/Swiss-Prot;Acc:Q94KT8]
SUBAcon: [endoplasmic reticulum,plastid,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.