Factsheet for PGSC0003DMT400065836

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065840	Potato	endoplasmic reticulum, extracellular, plasma membrane	100.0	72.04
Solyc01g065530.2.1	Tomato	nucleus, plastid	98.72	71.45
PGSC0003DMT400002688	Potato	cytosol	14.5	52.71
KRH02312	Soybean	endoplasmic reticulum, extracellular	70.36	51.24
VIT_05s0077g01470.t01	Wine grape	plasma membrane	70.58	50.84
KRH50776	Soybean	endoplasmic reticulum, vacuole	69.08	50.39
CDY34424	Canola	plasma membrane	66.95	47.65
GSMUA_Achr8P10390_001	Banana	cytosol	25.37	47.6
Bra033528.1-P	Field mustard	plasma membrane	66.52	47.34
CDY32210	Canola	plasma membrane	66.52	47.27
AT4G16120.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	66.1	46.9
AT3G16860.1	Thale cress	plasma membrane	63.54	45.64
CDY52722	Canola	endoplasmic reticulum, plasma membrane, vacuole	61.83	43.61
CDY34980	Canola	endoplasmic reticulum, plasma membrane, vacuole	61.41	43.18
Bra021208.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	60.98	42.88
GSMUA_Achr11P...	Banana	plasma membrane	60.13	41.72
GSMUA_AchrUn_...	Banana	plasma membrane	59.28	41.68
HORVU2Hr1G015440.1	Barley	cytosol	48.61	41.38
Zm00001d028826_P001	Maize	plasma membrane	57.36	40.33
EER95000	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	56.72	39.7
Os03t0301200-01	Rice	extracellular, plasma membrane, vacuole	56.72	39.64
TraesCS4B01G187300.1	Wheat	golgi	55.22	38.83
PGSC0003DMT400002678	Potato	vacuole	54.58	38.73
TraesCS4D01G188600.1	Wheat	golgi	55.44	38.63
PGSC0003DMT400037398	Potato	vacuole	54.37	38.46
Zm00001d007208_P001	Maize	extracellular, plasma membrane, vacuole	53.3	38.23
TraesCS4A01G117100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	54.8	38.19
OQU90545	Sorghum	extracellular, plasma membrane, vacuole	51.6	36.61
TraesCS2B01G107700.1	Wheat	plasma membrane	49.47	35.2
PGSC0003DMT400005270	Potato	cytosol	53.52	35.06
HORVU0Hr1G030030.1	Barley	extracellular, plasma membrane	49.04	34.8
TraesCS2D01G092100.1	Wheat	plasma membrane	48.83	34.7
Os07t0690900-01	Rice	plasma membrane	48.83	33.93
TraesCS2A01G092900.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	49.04	33.24
HORVU4Hr1G054770.1	Barley	plastid	55.65	33.04
PGSC0003DMT400082702	Potato	extracellular	15.78	29.84
PGSC0003DMT400003723	Potato	extracellular	26.44	28.57
PGSC0003DMT400002674	Potato	plasma membrane	25.59	27.65
PGSC0003DMT400068328	Potato	extracellular	25.37	26.8
PGSC0003DMT400003470	Potato	extracellular	25.16	26.4
PGSC0003DMT400063318	Potato	cytosol	22.39	25.99
PGSC0003DMT400063055	Potato	extracellular, mitochondrion	25.16	25.93
PGSC0003DMT400004139	Potato	extracellular	10.02	22.82
PGSC0003DMT400081003	Potato	cytosol	3.41	13.79
PGSC0003DMT400002667	Potato	cytosol, golgi, peroxisome	4.48	13.46

Protein Annotations

MapMan:21.1.2.2	InterPro:COBRA_pln	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007
UniProt:M1CEN5	PFAM:PD140986	PFAM:PF04833	EnsemblPlantsGene:PGSC0003DMG402025624	PGSC:PGSC0003DMG402025624	EnsemblPlants:PGSC0003DMT400065836
PIRSF:PIRSF038122	PANTHER:PTHR31052	PANTHER:PTHR31052:SF3	TMHMM:TMhelix	UniParc:UPI000295B8CA	SEG:seg

Description

Protein COBRA [Source:PGSC_GENE;Acc:PGSC0003DMG402025624]

Coordinates

chr1:-:12000588..12004644

Molecular Weight (calculated)

51844.9 Da

IEP (calculated)

6.676

GRAVY (calculated)

-0.166

Length

469 amino acids

Sequence
(BLAST)

001: MQVCCIKDEK FKTNLTLGEK FSPRQDGDLT IMYDILRTYD SNYWAQVTIA NHNPLGRLDN WKLSWDWMKD EFIWEMKGAY PSVVDTSECV FGPQAKFYQN
101: LDFSTGLNCQ RRPTLIDLPL EKTNDTKLGM IPFCCRNGTI LPPAMDPSKS VSAFQMNVFK MPPDLNRSSF TPPQNWKIEG RLNPDYKCGP PVRVSPTQVP
201: DPSGLLPATS VFASWQVVCN ITQPKGASPR CCVSFSAFYN ESIIPCPTCA CGCPSNTGRT CSTKAPALLL PSQALLVPFD NRTKMSLAWA DINHLPVSNP
301: LPCGDNCGVS INWHLFTDYR GGWSARITIF NWEDAAFADW FTAVELDKAA AGFDAVYSFN GTMLDGVNNT IFMQGLPGLN YIVAEADGAN PEKDPRVPGK
401: QQSVISFTKK NIPNINIAAG DGFPTKLYFN GEECSLPKVL PTSSSSRISS FTVTTSILAA VVVFMLVRQ

Best Arabidopsis Sequence Match ( AT4G16120.1 )
(BLAST)

001: MDSAPNFIPR LLLLSLLIVS IPLTSSQSDA NTTNPSPSPP SDSDLCNGVF VSYTHTKGSK IPPNDTANQP YRFESVITVL NHGRDELKSW RVFVKFAHRE
101: ILVSASNAVL SDGSSLPVSV ENGTVFAGYP SSDLKSAIQT AGDVTQMQAR VELVGTQFGV APPNVPLPKN ITLATDGWKC PKATQKGTNV LQVCCIPDPD
201: YDNREIIDNE FLPRKDGDLT IMYDVVRSYS SNYMAQVTME NHNPLGRLDN WKLSFDWMRD EFIYTMKGAY PSIVDSSDCV DGPQAKHYQD LDFSNVLSCA
301: RRPTVIDLPP TKYNDSTFGL IPFCCRNGTI LPRSMDPSKS SSVFQMQVYK MPPDLNISAL SPPQNWRING TLNPDYKCGP PVRVSPSQFV DPSGLPSNRT
401: AFASWQVVCN ITQPKDASPR CCVSFSAYFN DSIVPCKTCA CGCSSNKAAR ACSATAPSLL LPQQALLVPF ENRTELTVAW AYLKQRPVPN PMPCGDNCGV
501: SINWHLATDY RGGWTARVTV FNWGETDFVD WFTAVQMKNA APGFEKAYSF NASTIGINGK NNTIFMEGLP GLNYLVAERD GENPLKNPRI PGKQQSVMSF
601: TKKLTPGINV PGGDGFPSKV FFNGEECSLP TILPMRSSQH RKHISVFLLA LPVLALLILR A

Arabidopsis Description

COBL7COBRA-like protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ17]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.