Factsheet for PGSC0003DMT400002688

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plasma membrane 1
cytosol 3
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57659	Canola	cytosol	37.21	31.37
PGSC0003DMT400002678	Potato	vacuole	96.9	18.91
Bra035768.1-P	Field mustard	mitochondrion, peroxisome, plastid	55.04	18.68
CDY19626	Canola	mitochondrion	49.61	15.53
PGSC0003DMT400037398	Potato	vacuole	78.29	15.23
PGSC0003DMT400065836	Potato	cytosol	52.71	14.5
PGSC0003DMT400004139	Potato	extracellular	22.48	14.08
PGSC0003DMT400081003	Potato	cytosol	12.4	13.79
VIT_19s0177g00160.t01	Wine grape	plasma membrane	58.91	11.6
VIT_10s0116g00620.t01	Wine grape	extracellular	58.14	11.47
AT4G27110.1	Thale cress	extracellular	55.04	10.63
PGSC0003DMT400065840	Potato	endoplasmic reticulum, extracellular, plasma membrane	52.71	10.45
AT3G20580.1	Thale cress	endoplasmic reticulum, vacuole	53.49	10.27
PGSC0003DMT400002667	Potato	cytosol, golgi, peroxisome	12.4	10.26
GSMUA_Achr3P21560_001	Banana	plasma membrane	51.94	10.21
CDY36030	Canola	vacuole	51.16	10.19
Bra001795.1-P	Field mustard	endoplasmic reticulum, vacuole	52.71	10.18
CDX82237	Canola	endoplasmic reticulum, vacuole	52.71	10.18
Bra023941.1-P	Field mustard	plasma membrane	52.71	10.12
Bra026378.1-P	Field mustard	extracellular, golgi, vacuole	51.16	10.11
CDX89278	Canola	extracellular, golgi, vacuole	51.94	10.11
Bra010411.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	51.94	10.11
Solyc07g064200.2.1	Tomato	extracellular, golgi, vacuole	48.06	10.08
CDX97377	Canola	endoplasmic reticulum, golgi, vacuole	51.94	10.08
CDY29275	Canola	extracellular, plasma membrane, vacuole	51.94	10.08
CDY14283	Canola	endoplasmic reticulum, plasma membrane, vacuole	51.94	9.81
GSMUA_Achr4P33540_001	Banana	vacuole	49.61	9.62
HORVU7Hr1G028350.1	Barley	golgi, mitochondrion, plasma membrane	48.84	9.38
TraesCS7B01G037700.1	Wheat	mitochondrion	48.84	9.35
TraesCS7D01G136500.1	Wheat	mitochondrion	48.84	9.35
TraesCS7A01G136600.1	Wheat	mitochondrion	48.06	9.2
Os06t0685100-00	Rice	plasma membrane	47.29	8.93
KRH22248	Soybean	golgi, vacuole	45.74	8.86
KXG36369	Sorghum	mitochondrion	44.96	8.62
KRH27088	Soybean	mitochondrion	44.19	8.49
Zm00001d021661_P001	Maize	mitochondrion	44.19	8.41
PGSC0003DMT400005270	Potato	cytosol	44.96	8.1
CDY55591	Canola	plasma membrane	51.94	8.05
PGSC0003DMT400063318	Potato	cytosol	24.81	7.92
CDY43072	Canola	plasma membrane	51.16	7.81
PGSC0003DMT400003723	Potato	extracellular	24.03	7.14
PGSC0003DMT400063055	Potato	extracellular, mitochondrion	24.81	7.03
PGSC0003DMT400002674	Potato	plasma membrane	23.26	6.91
PGSC0003DMT400068328	Potato	extracellular	20.93	6.08
PGSC0003DMT400003470	Potato	extracellular	20.16	5.82
PGSC0003DMT400082702	Potato	extracellular	0.0	0.0
CDY09102	Canola	cytosol	0.0	0.0
Bra020151.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400002688	EnsemblPlantsGene:PGSC0003DMG400001036	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR31052
PANTHER:PTHR31052:SF2	PGSC:PGSC0003DMG400001036	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002953A59	UniProt:M0ZKH0
MapMan:35.1	:	:	:	:	:

Description

COBRA 11 [Source:PGSC_GENE;Acc:PGSC0003DMG400001036]

Coordinates

chr7:+:54495696..54496085

Molecular Weight (calculated)

14240.3 Da

IEP (calculated)

9.841

GRAVY (calculated)

-0.153

Length

129 amino acids

Sequence
(BLAST)

001: MKKDVANGYE NVYSFNGTKL PKEKSNTIFM QGLPGLKFLV GEVNGTNPNK DPRVPGKQQS IISFLKKNTP HINIDGGDGF PSKVFFNGEE CVLPLEFPKN
101: TAAFKSKFGV LPAVLLALLT FLLLTDWLH

Best Arabidopsis Sequence Match ( AT4G27110.1 )
(BLAST)

001: MKKLRYVHLN LLLLLLPLIN LQFPTLSLAQ DYDEPKKDDT PPPGLARCNG VYMSYSSGGR EKLYPRTTNA TAQAWSFKST AMIVNTGIEE VKGWQMFVGF
101: HHREIIVSAT GAVSSDGDFP VDATNGTTFI GSQNTDLKTS ILTAGDYTQI STNIEITGTV FGGKGTATPM PKSIKLTNDG WQCPAATSKG GTMQVCCKRN
201: PKFKAKEKVK TKFMPRQHGD LNIIYDVLQA YASSYMAQVT IDNTSPLGRL DHWNLTWEWM RGEFIHSMRG AYAAEKNTLE CLSSKAGQFY GDLDFSQVAN
301: CQKKPIIKDL PAERKDDNVT GKLPFCCKNG TLLPTHMDPS KSKAIFQLQV YKVPPDQNRT AFFPPRNWKI DGIVNPTYKC GPPIRVDATP FPDPSGLQAT
401: TYAIASWQVI CNITKPKPQA ARCCVSFSAF YNDSAIPCNT CACGCKDIDT DTCNANARQL LLPTDTLLVP FDNRTLKAKV WAKQKHMAYP KKLPCPDNCG
501: ISLNWHLNSD YGNGWSARVT LFNWGNNAVE DWFGALDLGK AGLGYENIYS FNGSRVPPKN QTIFFQGLPG MNYLIGITNG TNPARDPQIP GKMQSVISFK
601: KKNLGSLNII GGDGFPKRVF FNGEECELPK YFPKKSSGMR LSGIRFLPSI LLAITTFHAI TDRLLTGV

Arabidopsis Description

COBL11COBRA-like protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9T045]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.