CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89278	Canola	extracellular, golgi, vacuole	96.24	96.53
Bra026378.1-P	Field mustard	extracellular, golgi, vacuole	94.29	96.02
CDX97377	Canola	endoplasmic reticulum, golgi, vacuole	91.28	91.28
CDY14283	Canola	endoplasmic reticulum, plasma membrane, vacuole	92.03	89.6
AT4G27110.1	Thale cress	extracellular	84.81	84.43
CDY09102	Canola	cytosol	29.92	76.25
CDY36030	Canola	vacuole	67.07	68.83
CDX82237	Canola	endoplasmic reticulum, vacuole	67.97	67.66
CDY19626	Canola	mitochondrion	40.9	66.02
CDY57659	Canola	cytosol	13.53	58.82
VIT_10s0116g00620.t01	Wine grape	extracellular	54.89	55.81
VIT_19s0177g00160.t01	Wine grape	plasma membrane	53.83	54.66
KRH27088	Soybean	mitochondrion	54.89	54.4
KRH22248	Soybean	golgi, vacuole	54.44	54.35
CDY55591	Canola	plasma membrane	67.97	54.33
PGSC0003DMT400002678	Potato	vacuole	53.23	53.56
GSMUA_Achr3P21560_001	Banana	plasma membrane	52.63	53.35
CDY43072	Canola	plasma membrane	67.22	52.9
Solyc07g064200.2.1	Tomato	extracellular, golgi, vacuole	48.72	52.68
GSMUA_Achr4P33540_001	Banana	vacuole	52.63	52.63
PGSC0003DMT400037398	Potato	vacuole	52.18	52.34
PGSC0003DMT400002688	Potato	cytosol	10.08	51.94
Solyc10g006450.2.1	Tomato	golgi, plasma membrane, vacuole	52.18	51.71
Zm00001d021661_P001	Maize	mitochondrion	52.63	51.62
HORVU7Hr1G028350.1	Barley	golgi, mitochondrion, plasma membrane	51.88	51.34
KXG36369	Sorghum	mitochondrion	51.73	51.11
TraesCS7D01G136500.1	Wheat	mitochondrion	51.58	50.89
Os06t0685100-00	Rice	plasma membrane	52.18	50.81
TraesCS7B01G037700.1	Wheat	mitochondrion	51.13	50.45
TraesCS7A01G136600.1	Wheat	mitochondrion	50.98	50.3
CDY34424	Canola	plasma membrane	46.32	46.74
CDY32210	Canola	plasma membrane	46.32	46.67
CDY00037	Canola	plasma membrane	45.26	45.47
CDY49611	Canola	plasma membrane	45.26	45.47
CDY52722	Canola	endoplasmic reticulum, plasma membrane, vacuole	43.31	43.31
CDY34980	Canola	endoplasmic reticulum, plasma membrane, vacuole	42.86	42.73
CDX85277	Canola	extracellular	18.2	27.75
CDX90983	Canola	extracellular	18.05	27.59
CDY70289	Canola	extracellular	16.39	27.46
CDX86358	Canola	extracellular	17.89	27.29
CDX85543	Canola	extracellular, plasma membrane, vacuole	18.2	26.54
CDY26444	Canola	plastid	14.59	26.5
CDY31063	Canola	plasma membrane	17.29	26.5
CDX69511	Canola	plasma membrane	18.05	26.37
CDY66895	Canola	cytosol	2.26	26.32
CDX87193	Canola	plasma membrane	17.74	25.88
CDY02184	Canola	plasma membrane	17.74	25.82
CDY16831	Canola	plasma membrane	17.59	25.55
CDX93481	Canola	plasma membrane	16.84	25.51
CDY58691	Canola	plasma membrane	17.44	25.33
CDY58695	Canola	extracellular	7.67	24.76
CDY60470	Canola	plasma membrane	16.69	24.24
CDY20671	Canola	extracellular, plasma membrane, vacuole	16.54	24.18
CDY43250	Canola	plasma membrane	16.39	23.85
CDY02181	Canola	endoplasmic reticulum, extracellular	7.37	23.79
CDY42842	Canola	cytosol	4.21	22.95
CDY26445	Canola	cytosol	5.41	21.3
CDY24004	Canola	cytosol, nucleus, plastid	2.56	20.0
CDX94950	Canola	nucleus	16.39	19.12
CDY29033	Canola	cytosol	4.96	18.13
CDX87194	Canola	mitochondrion	5.41	17.22
CDY14723	Canola	cytosol	7.82	16.35
CDX70627	Canola	cytosol, nucleus, plasma membrane	18.65	14.45

Protein Annotations

MapMan:21.1.2.2	GO:A0A078GS18	UniProt:A0A078GS18	EnsemblPlants:CDY29275	ProteinID:CDY29275	ProteinID:CDY29275.1
InterPro:COBRA_pln	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	EnsemblPlantsGene:GSBRNA2T00042214001
PFAM:PD140986	PFAM:PF04833	PANTHER:PTHR31052	PANTHER:PTHR31052:SF2	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI0004EF48EA	SEG:seg	:	:	:	:

Description

BnaC01g19270DBnaC01g19270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GS18]

Coordinates

chrLK032234:-:150943..153770

Molecular Weight (calculated)

73693.6 Da

IEP (calculated)

9.441

GRAVY (calculated)

-0.290

Length

665 amino acids

Sequence
(BLAST)

001: MKIRYLHSNL LLLVLPLIIL LFPTLSRAQD YGEDATKTDT PPPGLARCNG VYMSYNSGGR EKLYPRTKNA TAQAWSFKAT AMIVNTGIEE VKGWEMFVGY
101: RHREIIVSAT GAVSSDGDFP YDASNGTTFI GSPNTDLKTS IETAGDYTKI STNIEITGTL FGGRGTATPL PKSIKLVNDG WQCPAATSKG GTMQVCCKRN
201: PKFKAKKKAK TKFTPRRHGD LNIIYDVLQA YTSNYMAQAI YYINNDSPLG RLDHWNLTWE WMRGEFIHSL RGAYSAEKNP SECLHSKAGQ FYGDLDFSQV
301: ATCQKKPIIK DLPAERKEDK LLGMLPFCCK NGTLLPALMD ASKSRAIFQL QVYKVPPDQN RTAFFPPQHW KIDGIVNPQY KCGPPVRVDP TGFPDPSGLQ
401: ATTYAFATWQ VICNITKPKP KAARCCVSYS AFYNDSAIPC NTCACGCGDI DTDTCNANAR QLLLPPDSLL VPFENRTLKA KVWAKRKHMA FPKKLPCPDN
501: CGISLNWHVN SDYADGWSAR VTVFNWGANA VEDWFAAVDL GKAGLGYENV YSFNGSRVPP KNQTIFFQGV RGMNFLIGLT NGTHPGRDPK VPGKMQSVIS
601: FKKHLGSLNI PRGDGFPKRV FFNGEECELP KFFPKKSSGK RLSGIGFLPS ILLVITTFLV FMCSF

Best Arabidopsis Sequence Match ( AT4G27110.1 )
(BLAST)

001: MKKLRYVHLN LLLLLLPLIN LQFPTLSLAQ DYDEPKKDDT PPPGLARCNG VYMSYSSGGR EKLYPRTTNA TAQAWSFKST AMIVNTGIEE VKGWQMFVGF
101: HHREIIVSAT GAVSSDGDFP VDATNGTTFI GSQNTDLKTS ILTAGDYTQI STNIEITGTV FGGKGTATPM PKSIKLTNDG WQCPAATSKG GTMQVCCKRN
201: PKFKAKEKVK TKFMPRQHGD LNIIYDVLQA YASSYMAQVT IDNTSPLGRL DHWNLTWEWM RGEFIHSMRG AYAAEKNTLE CLSSKAGQFY GDLDFSQVAN
301: CQKKPIIKDL PAERKDDNVT GKLPFCCKNG TLLPTHMDPS KSKAIFQLQV YKVPPDQNRT AFFPPRNWKI DGIVNPTYKC GPPIRVDATP FPDPSGLQAT
401: TYAIASWQVI CNITKPKPQA ARCCVSFSAF YNDSAIPCNT CACGCKDIDT DTCNANARQL LLPTDTLLVP FDNRTLKAKV WAKQKHMAYP KKLPCPDNCG
501: ISLNWHLNSD YGNGWSARVT LFNWGNNAVE DWFGALDLGK AGLGYENIYS FNGSRVPPKN QTIFFQGLPG MNYLIGITNG TNPARDPQIP GKMQSVISFK
601: KKNLGSLNII GGDGFPKRVF FNGEECELPK YFPKKSSGMR LSGIRFLPSI LLAITTFHAI TDRLLTGV

Arabidopsis Description

COBL11COBRA-like protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9T045]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.