CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90983	Canola	extracellular	86.34	72.64
CDX69511	Canola	plasma membrane	89.34	71.87
AT5G15630.1	Thale cress	extracellular, plasma membrane, vacuole	83.88	71.23
CDX85543	Canola	extracellular, plasma membrane, vacuole	87.7	70.39
Bra008684.1-P	Field mustard	extracellular	73.77	69.77
PGSC0003DMT400082702	Potato	extracellular	44.81	66.13
CDY66895	Canola	cytosol	10.11	64.91
CDY26445	Canola	cytosol	29.23	63.31
VIT_14s0083g01150.t01	Wine grape	plasma membrane	73.5	62.41
KRH45086	Soybean	plasma membrane	73.5	62.41
CDY24004	Canola	cytosol, nucleus, plastid	14.48	62.35
PGSC0003DMT400003723	Potato	extracellular	73.77	62.21
KRG93686	Soybean	extracellular, plasma membrane, vacuole	73.22	62.18
KRH01361	Soybean	extracellular, plasma membrane, vacuole	73.22	62.18
PGSC0003DMT400002674	Potato	plasma membrane	70.49	59.45
CDY70289	Canola	extracellular	58.2	53.65
KRH18350	Soybean	cytosol	24.59	50.56
CDX86358	Canola	extracellular	59.29	49.77
CDX85277	Canola	extracellular	58.74	49.31
CDY02184	Canola	plasma membrane	61.2	49.02
CDY58691	Canola	plasma membrane	61.2	48.91
CDX87193	Canola	plasma membrane	60.93	48.9
CDY16831	Canola	plasma membrane	60.93	48.69
CDY60470	Canola	plasma membrane	60.38	48.25
CDY43250	Canola	plasma membrane	59.56	47.7
CDY02181	Canola	endoplasmic reticulum, extracellular	24.86	44.17
CDY58695	Canola	extracellular	24.59	43.69
CDY29033	Canola	cytosol	21.04	42.31
CDX93481	Canola	plasma membrane	45.9	38.27
CDY31063	Canola	plasma membrane	45.36	38.25
CDX70627	Canola	cytosol, nucleus, plasma membrane	85.52	36.48
CDY20671	Canola	extracellular, plasma membrane, vacuole	45.08	36.26
CDY14723	Canola	cytosol	26.5	30.5
CDX94950	Canola	nucleus	45.08	28.95
CDY42842	Canola	cytosol	9.56	28.69
CDY09102	Canola	cytosol	15.57	21.84
CDY19626	Canola	mitochondrion	21.58	19.17
CDX87194	Canola	mitochondrion	10.66	18.66
CDY36030	Canola	vacuole	26.78	15.12
CDX82237	Canola	endoplasmic reticulum, vacuole	27.05	14.82
CDX89278	Canola	extracellular, golgi, vacuole	26.78	14.78
CDY52722	Canola	endoplasmic reticulum, plasma membrane, vacuole	26.5	14.59
CDY29275	Canola	extracellular, plasma membrane, vacuole	26.5	14.59
CDX97377	Canola	endoplasmic reticulum, golgi, vacuole	26.5	14.59
CDY32210	Canola	plasma membrane	26.23	14.55
CDY34424	Canola	plasma membrane	25.96	14.42
CDY34980	Canola	endoplasmic reticulum, plasma membrane, vacuole	26.23	14.39
CDY14283	Canola	endoplasmic reticulum, plasma membrane, vacuole	26.78	14.35
CDY49611	Canola	plasma membrane	25.68	14.2
CDY00037	Canola	plasma membrane	25.41	14.05
CDY57659	Canola	cytosol	5.74	13.73
CDY55591	Canola	plasma membrane	27.87	12.26
CDY43072	Canola	plasma membrane	27.6	11.95

Protein Annotations

MapMan:21.1.2.2	GO:A0A078GMJ3	UniProt:A0A078GMJ3	EnsemblPlants:CDY26444	ProteinID:CDY26444	ProteinID:CDY26444.1
InterPro:COBRA_pln	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987	GO:GO:0010215	GO:GO:0016020
GO:GO:0016043	GO:GO:0016049	GO:GO:0031225	GO:GO:0040007	EnsemblPlantsGene:GSBRNA2T00035238001	PFAM:PD140986
PFAM:PF04833	PIRSF:PIRSF038122	PANTHER:PTHR31673	PANTHER:PTHR31673:SF2	UniParc:UPI0004EDF734	SEG:seg

Description

BnaC09g42240DBnaC09g42240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GMJ3]

Coordinates

chrLK032190:+:189393..191635

Molecular Weight (calculated)

40595.8 Da

IEP (calculated)

9.737

GRAVY (calculated)

-0.246

Length

366 amino acids

Sequence
(BLAST)

001: MSSPPHLSFF LSSTPSYLFT HFQATVTMNN FQIYRHIQNP GWTLGWAWAK KEMIWSMVGA QTTEQGDCSK FKGNVPHCCK KVPTVVDLLP GVPFNQQFSN
101: CCKGGVVGAW GQDPSSAVSQ FQVSVGLAGT TNKTVKLPKN FTLLGPGPGY SCGPAKIVPS TVFLTTDKRR KTQALSNIRH AVLNRTKLAG TKISGLSVTW
201: NVTCTYSQFL ARKHPSCCVS FSSFYNDTIT PCPSCACGCE NKKSCADPKI LTKKGLNTAR KDNAPLLQCT HHMCPVRVHW HVKVKYKDYW RVKIAITNFN
301: YKMNHTLWTL AVQHPNLNNV TQVFSFDYKS VAPYGSINDT GMFYGTKFYN DLLMEAGPSG NVQSEV

Best Arabidopsis Sequence Match ( AT5G15630.1 )
(BLAST)

001: MRLLFSFCFF FFMIIFTATA YDPLDPSGNI TIKWDIMSWT ADGYVATVTM NNFQIYRHIQ NPGWTLGWTW AKKEVIWSMV GAQTTEQGDC SKFKGNVPHC
101: CKKTPTVVDL LPGVPYNQQF SNCCKGGVIG AWGQDPSAAV SQFQVSAGLA GTTNKTVKLP KNFTLLGPGP GYTCGPAKIV PSTVFLTTDK RRKTQALMTW
201: NVTCTYSQFL ARKHPSCCVS FSSFYNDTIT PCPSCACGCE NKKSCVKADS KILTKKGLNT PKKDNTPLLQ CTHHMCPVRV HWHVKTNYKD YWRVKIAITN
301: FNYRMNHTLW TLAIQHPNLN NVTQVFSFDY KPVSPYGSIN DTGMFYGTKF YNDLLMEAGP SGNVQSEVLL QKDQKTFTFK QGWAFPRKVY FNGDECMLPP
401: PDSYPFLPNS AQGNFASFSL TILLLLFISI W

Arabidopsis Description

COBL4COBRA-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFW3]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.